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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:28.0RPKM
FANTOM5:86.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA057242

 

Antibody CAB011235

 

Glial cells

Not detected   Medium  

Neuronal cells

Low   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

28.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 28.0
Samples: 117

Max RPKM: 45
Min RPKM: 11.7
Std RPKM: 6.6
Median RPKM: 29
GTEX-132Q8-0011-R5a-SM-5IJDM 45.0
GTEX-13NYS-0011-R5a-SM-5MR4D 40.6
GTEX-X4XX-0011-R5A-SM-46MWN 39.2
GTEX-X585-0011-R5A-SM-46MVI 38.9
GTEX-WL46-0011-R5A-SM-3LK6V 38.4
GTEX-13X6K-0011-R5b-SM-5PNUE 38.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 37.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 37.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 37.1
GTEX-RVPV-0011-R5A-SM-2TF69 37.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 36.9
GTEX-N7MS-0011-R5a-SM-2HMK8 36.7
GTEX-13JUV-0011-R5a-SM-5LZY5 36.2
GTEX-13O3O-0011-R5b-SM-5KM44 36.0
GTEX-OHPN-0011-R5A-SM-2I5FF 35.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 35.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 35.6
GTEX-13G51-0011-R5a-SM-5L3EB 34.9
GTEX-QMR6-0011-R5A-SM-32PKT 34.7
GTEX-N7MT-0011-R5a-SM-2I3G6 34.4
GTEX-WWYW-0011-R5A-SM-3NB3E 34.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 34.1
GTEX-13OW6-0011-R5a-SM-5O9BK 33.6
GTEX-QVJO-0011-R5A-SM-2S1QM 33.5
GTEX-14BIM-0011-R5b-SM-5S2RM 33.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 33.1
GTEX-13X6I-0011-R5a-SM-5PNWW 32.7
GTEX-WZTO-0011-R5B-SM-3NMC5 32.4
GTEX-11H98-0011-R5b-SM-57WCF 32.3
GTEX-13NYB-0011-R5a-SM-5MR45 32.2
GTEX-R55E-0011-R5A-SM-2TC5N 32.2
GTEX-XMD1-0011-R5A-SM-4AT47 32.1
GTEX-13FLV-0011-R5a-SM-5LZWT 31.9
GTEX-13FXS-0011-R5b-SM-5LZYE 31.8
GTEX-131YS-0011-R5b-SM-5K7YB 31.6
GTEX-T6MN-0011-R5A-SM-32QPD 31.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 31.4
GTEX-1399T-0011-R5b-SM-5IJDK 31.3
GTEX-11GSP-0011-R5a-SM-57WBE 31.2
GTEX-13SLX-0011-R5a-SM-5O9BV 31.1
GTEX-WVLH-0011-R5A-SM-3MJFW 31.0
GTEX-11NV4-0011-R5a-SM-5NQ88 30.9
GTEX-13S7M-0011-R5b-SM-5P9HS 30.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 30.7
GTEX-145MH-0011-R5a-SM-5P9JT 30.5
GTEX-12WSA-0011-R5b-SM-5GU5I 30.4
GTEX-13OVH-0011-R5b-SM-5KM4L 30.3
GTEX-RU72-0011-R5A-SM-2TF6U 30.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 29.9
GTEX-13OW5-0011-R5b-SM-5L3FR 29.8
GTEX-XOTO-0011-R5A-SM-4B657 29.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 29.5
GTEX-NL4W-0011-R5a-SM-2I3GD 29.5
GTEX-12WSC-0011-R5b-SM-5CVNS 29.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 29.4
GTEX-P44H-0011-R5A-SM-2XCEX 29.3
GTEX-S7SE-0011-R5A-SM-2XCDA 29.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 29.1
GTEX-13JVG-0011-R5a-SM-5MR4O 29.0
GTEX-13OW7-0011-R5b-SM-5O9DM 28.9
GTEX-12WSF-0011-R5a-SM-5HL8K 28.8
GTEX-13OVL-0011-R5b-SM-5L3FU 28.5
GTEX-1313W-0011-R5b-SM-5L3EP 28.3
GTEX-13VXU-0011-R5a-SM-5O9D7 28.3
GTEX-ZUA1-0011-R5b-SM-51MTG 28.3
GTEX-13FLW-0011-R5a-SM-5LZX6 28.1
GTEX-PVOW-0011-R5A-SM-32PL7 28.0
GTEX-X261-0011-R5A-SM-3NMB4 27.4
GTEX-YFC4-0011-R5a-SM-4RGLR 27.4
GTEX-145LS-0011-R5a-SM-5SI65 27.2
GTEX-ZE7O-0011-R5a-SM-57WBO 27.2
GTEX-14ABY-0011-R5b-SM-5SI7B 27.1
GTEX-UTHO-0011-R5A-SM-3GIJD 26.9
GTEX-13X6J-0011-R5b-SM-5PNWT 26.3
GTEX-11OF3-0011-R5a-SM-57WB4 25.9
GTEX-ZXG5-0011-R5b-SM-57WBN 25.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 25.4
GTEX-139TS-0011-R5b-SM-5J2MZ 25.2
GTEX-12WSB-0011-R5b-SM-5GU67 25.1
GTEX-14BIN-0011-R5b-SM-5SI78 25.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 24.7
GTEX-T5JC-0011-R5A-SM-32PLK 24.5
GTEX-13CZV-0011-R5a-SM-5K7XA 24.4
GTEX-12WSD-0011-R5b-SM-5CVNG 24.1
GTEX-RVPU-0011-R5A-SM-2XCAD 23.9
GTEX-TSE9-0011-R5A-SM-3DB7J 23.7
GTEX-144GO-0011-R5a-SM-5PNUR 23.6
GTEX-NL3H-0011-R5a-SM-2I3GB 23.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 23.3
GTEX-139T8-0011-R5b-SM-5J1MO 23.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 23.0
GTEX-Z93S-0011-R5b-SM-4RGNI 22.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 22.1
GTEX-1445S-0011-R5a-SM-5PNUS 21.9
GTEX-144GL-0011-R5b-SM-5PNUJ 21.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 21.0
GTEX-12ZZX-0011-R5a-SM-5HL89 20.6
GTEX-13FHP-0011-R5b-SM-5LZY2 20.3
GTEX-NPJ7-0011-R5a-SM-33HBK 20.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 20.1
GTEX-ZVT3-0011-R5a-SM-51MSI 20.1
GTEX-139TT-0011-R5b-SM-5K7W8 18.3
GTEX-T2IS-0011-R5A-SM-32QP4 18.2
GTEX-11UD1-0011-R5b-SM-5P9FP 17.9
GTEX-YJ89-0011-R5a-SM-4V6GM 17.9
GTEX-13112-0011-R5b-SM-5DUV8 17.4
GTEX-11WQC-0011-R5a-SM-5BC74 17.2
GTEX-OXRN-0011-R5A-SM-2I5EF 17.2
GTEX-13CF2-0011-R5a-SM-5LZWS 16.5
GTEX-1477Z-0011-R5b-SM-5PNUO 16.3
GTEX-13CIG-0011-R5b-SM-5L3F2 16.1
GTEX-S7PM-0011-R5A-SM-3NM8G 15.7
GTEX-ZV68-0011-R5a-SM-4YCDW 15.6
GTEX-12WSH-0011-R5b-SM-5P9F3 14.1
GTEX-13NZA-0011-R5b-SM-5KM4K 13.3
GTEX-145MG-0011-R5b-SM-5S2VU 11.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

86.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 86.2
FF:10164-103B2 76 years, female 109.7
FF:10379-105H1 89 years, female 62.6

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