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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:54.4TPM
GTEx:59.4RPKM
FANTOM5:89.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA057242

  

Antibody CAB011235

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

54.4
overview Male, age 54
Sample 1
TPM: 67.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 50.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 47.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 75.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 40.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 50.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 50.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 53.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 53.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 51.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 63.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 51.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 51.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

59.4

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 59.8
Samples: 149

Max RPKM: 114.7
Min RPKM: 31.7
Std RPKM: 14.3
Median RPKM: 57.6
GTEX-14E6C-2226-SM-5QGQG 114.7
GTEX-13FHO-2726-SM-5K7VG 90.9
GTEX-11DXY-2026-SM-5N9CZ 88.2
GTEX-13X6I-2726-SM-5Q5ET 88.2
GTEX-11EMC-1426-SM-5N9E4 86.5
GTEX-13OW6-2226-SM-5N9FL 86.4
GTEX-14A5I-2426-SM-5Q5CP 85.5
GTEX-1477Z-2126-SM-5Q5CM 85.1
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 59.1
Samples: 196

Max RPKM: 89.6
Min RPKM: 17.4
Std RPKM: 8.8
Median RPKM: 59.2
GTEX-11TT1-1026-SM-5PNW7 89.6
GTEX-13OVI-2026-SM-5J1MU 89.4
GTEX-Y5LM-1526-SM-4VDTA 80.3
GTEX-O5YT-1426-SM-3MJHC 80.0
GTEX-144GN-1126-SM-5LU33 79.1
GTEX-111CU-1426-SM-5GZYP 77.0
GTEX-11TUW-2026-SM-5EQL8 76.3
GTEX-WQUQ-2526-SM-4MVNO 76.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

89.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 89.8
FF:10014-101C5 62,83,84 years, mixed 89.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.