We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CDIP1
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:38.3RPKM
FANTOM5:304.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA049352

 

Glial cells

Medium  

Neuronal cells

Medium  
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

38.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 38.3
Samples: 117

Max RPKM: 59.8
Min RPKM: 15.2
Std RPKM: 9.3
Median RPKM: 39.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 59.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 58.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 54.7
GTEX-T6MN-0011-R5A-SM-32QPD 54.6
GTEX-13X6K-0011-R5b-SM-5PNUE 53.5
GTEX-139TT-0011-R5b-SM-5K7W8 53.2
GTEX-13G51-0011-R5a-SM-5L3EB 52.6
GTEX-145MH-0011-R5a-SM-5P9JT 51.0
GTEX-N7MT-0011-R5a-SM-2I3G6 50.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 49.9
GTEX-13SLX-0011-R5a-SM-5O9BV 49.1
GTEX-12WSC-0011-R5b-SM-5CVNS 48.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 48.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 48.5
GTEX-ZUA1-0011-R5b-SM-51MTG 48.3
GTEX-13VXU-0011-R5a-SM-5O9D7 48.0
GTEX-11H98-0011-R5b-SM-57WCF 47.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 47.9
GTEX-13O3O-0011-R5b-SM-5KM44 47.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 47.2
GTEX-11GSP-0011-R5a-SM-57WBE 47.1
GTEX-131YS-0011-R5b-SM-5K7YB 46.9
GTEX-T5JC-0011-R5A-SM-32PLK 46.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 46.7
GTEX-144GO-0011-R5a-SM-5PNUR 46.6
GTEX-14BIM-0011-R5b-SM-5S2RM 46.4
GTEX-N7MS-0011-R5a-SM-2HMK8 46.2
GTEX-13S7M-0011-R5b-SM-5P9HS 45.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 45.8
GTEX-11OF3-0011-R5a-SM-57WB4 45.6
GTEX-13NYB-0011-R5a-SM-5MR45 45.1
GTEX-145LS-0011-R5a-SM-5SI65 44.9
GTEX-13FXS-0011-R5b-SM-5LZYE 44.8
GTEX-1313W-0011-R5b-SM-5L3EP 44.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 44.0
GTEX-QVJO-0011-R5A-SM-2S1QM 44.0
GTEX-13OVH-0011-R5b-SM-5KM4L 43.8
GTEX-13OW6-0011-R5a-SM-5O9BK 43.5
GTEX-1399T-0011-R5b-SM-5IJDK 43.3
GTEX-TSE9-0011-R5A-SM-3DB7J 43.3
GTEX-13CZV-0011-R5a-SM-5K7XA 42.5
GTEX-RVPV-0011-R5A-SM-2TF69 42.5
GTEX-RU72-0011-R5A-SM-2TF6U 42.3
GTEX-UTHO-0011-R5A-SM-3GIJD 42.1
GTEX-S7SE-0011-R5A-SM-2XCDA 42.0
GTEX-WVLH-0011-R5A-SM-3MJFW 41.5
GTEX-13OVL-0011-R5b-SM-5L3FU 41.3
GTEX-13NYS-0011-R5a-SM-5MR4D 41.0
GTEX-13JVG-0011-R5a-SM-5MR4O 40.9
GTEX-P44H-0011-R5A-SM-2XCEX 40.8
GTEX-X585-0011-R5A-SM-46MVI 40.8
GTEX-11NV4-0011-R5a-SM-5NQ88 40.7
GTEX-13FLW-0011-R5a-SM-5LZX6 40.6
GTEX-13OW5-0011-R5b-SM-5L3FR 40.6
GTEX-WL46-0011-R5A-SM-3LK6V 40.4
GTEX-14ABY-0011-R5b-SM-5SI7B 40.3
GTEX-13X6J-0011-R5b-SM-5PNWT 40.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 40.0
GTEX-132Q8-0011-R5a-SM-5IJDM 39.9
GTEX-12WSB-0011-R5b-SM-5GU67 39.5
GTEX-WZTO-0011-R5B-SM-3NMC5 39.2
GTEX-13FLV-0011-R5a-SM-5LZWT 39.1
GTEX-RVPU-0011-R5A-SM-2XCAD 39.1
GTEX-OHPN-0011-R5A-SM-2I5FF 39.0
GTEX-13OW7-0011-R5b-SM-5O9DM 38.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 38.7
GTEX-WWYW-0011-R5A-SM-3NB3E 38.6
GTEX-13JUV-0011-R5a-SM-5LZY5 37.8
GTEX-13X6I-0011-R5a-SM-5PNWW 37.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 37.3
GTEX-R55E-0011-R5A-SM-2TC5N 37.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 36.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 36.9
GTEX-NL4W-0011-R5a-SM-2I3GD 36.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 35.9
GTEX-ZE7O-0011-R5a-SM-57WBO 34.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 34.3
GTEX-1445S-0011-R5a-SM-5PNUS 34.2
GTEX-XOTO-0011-R5A-SM-4B657 34.0
GTEX-13CIG-0011-R5b-SM-5L3F2 33.7
GTEX-12WSA-0011-R5b-SM-5GU5I 33.2
GTEX-12ZZX-0011-R5a-SM-5HL89 32.9
GTEX-ZXG5-0011-R5b-SM-57WBN 32.9
GTEX-12WSH-0011-R5b-SM-5P9F3 32.7
GTEX-12WSF-0011-R5a-SM-5HL8K 31.9
GTEX-ZV68-0011-R5a-SM-4YCDW 31.6
GTEX-NL3H-0011-R5a-SM-2I3GB 31.3
GTEX-12WSD-0011-R5b-SM-5CVNG 31.0
GTEX-14BIN-0011-R5b-SM-5SI78 31.0
GTEX-X261-0011-R5A-SM-3NMB4 30.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 30.6
GTEX-XMD1-0011-R5A-SM-4AT47 30.2
GTEX-YFC4-0011-R5a-SM-4RGLR 30.2
GTEX-QMR6-0011-R5A-SM-32PKT 30.1
GTEX-PVOW-0011-R5A-SM-32PL7 29.9
GTEX-OXRN-0011-R5A-SM-2I5EF 29.2
GTEX-Z93S-0011-R5b-SM-4RGNI 28.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 28.6
GTEX-T2IS-0011-R5A-SM-32QP4 28.4
GTEX-YJ89-0011-R5a-SM-4V6GM 27.9
GTEX-X4XX-0011-R5A-SM-46MWN 27.6
GTEX-ZVT3-0011-R5a-SM-51MSI 26.3
GTEX-11WQC-0011-R5a-SM-5BC74 25.5
GTEX-NPJ7-0011-R5a-SM-33HBK 25.3
GTEX-S7PM-0011-R5A-SM-3NM8G 25.3
GTEX-144GL-0011-R5b-SM-5PNUJ 24.3
GTEX-13FHP-0011-R5b-SM-5LZY2 24.1
GTEX-13112-0011-R5b-SM-5DUV8 23.9
GTEX-139T8-0011-R5b-SM-5J1MO 23.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 23.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.5
GTEX-1477Z-0011-R5b-SM-5PNUO 22.0
GTEX-13CF2-0011-R5a-SM-5LZWS 20.9
GTEX-139TS-0011-R5b-SM-5J2MZ 20.8
GTEX-11UD1-0011-R5b-SM-5P9FP 20.7
GTEX-13NZA-0011-R5b-SM-5KM4K 16.8
GTEX-145MG-0011-R5b-SM-5S2VU 15.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

304.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 304.3
FF:10379-105H1 89 years, female 346.9
FF:10164-103B2 76 years, female 261.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.