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SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:47.7TPM
GTEx:23.5RPKM
FANTOM5:56.7Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Fibroblasts:Low
Peripheral nerve:Low
Chondrocytes:Not available
 
 

Antibody staining

Antibody HPA025770

  

Antibody HPA025948

  

Antibody HPA027341

  

Antibody CAB017785

  

Adipocytes

 Not detected   Not detected   Medium   Low  

Fibroblasts

 Not detected   Not detected   Medium   Medium  

Peripheral nerve

 Not detected   Not detected   Medium   Not detected  

Chondrocytes

 Medium  
          
       
       
       

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Not available
Fibroblasts:Low
Peripheral nerve:Low
 
 

Antibody staining

Antibody HPA025770

  

Antibody HPA025948

  

Antibody HPA027341

  

Antibody CAB017785

  

Adipocytes

 Not detected   Not detected   Low   Not detected  

Fibroblasts

 Not detected   Not detected   High   Low  

Peripheral nerve

 Not detected   Low   Low  
          
       
       
       

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

47.7
N/A Female, age 80
Sample 1
TPM: 48.7
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45
Sample 2
TPM: 52.0
N/A Female, age 57
Sample 3
TPM: 50.3
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74
Sample 4
TPM: 53.5
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59
Sample 5
TPM: 33.9
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

23.5

GTEx sample id

RPKM
 

Adipose - Subcutaneous
Adipose - Subcutaneous
RPKM: 23.4
Samples: 350

Max RPKM: 40.5
Min RPKM: 11.1
Std RPKM: 4.8
Median RPKM: 23
GTEX-WY7C-2426-SM-3NB2V 40.5
GTEX-ZP4G-2326-SM-57WEM 39.5
GTEX-Y5V6-2526-SM-5IFJV 37.4
GTEX-11P82-1726-SM-5Q5AT 36.5
GTEX-OHPN-0226-SM-48TBV 36.2
GTEX-ZT9X-1926-SM-57WE7 35.2
GTEX-11EMC-2826-SM-5PNY6 35.0
GTEX-ZQG8-1526-SM-5HL65 35.0
Show all
 

Adipose - Visceral (Omentum)
Adipose - Visceral (Omentum)
RPKM: 23.7
Samples: 227

Max RPKM: 57
Min RPKM: 11.6
Std RPKM: 7
Median RPKM: 22.5
GTEX-Y5LM-0826-SM-4VDSW 57.0
GTEX-ZLWG-0726-SM-5S2NG 45.5
GTEX-13X6H-1726-SM-5Q5EH 42.5
GTEX-XV7Q-1726-SM-4BRUU 42.0
GTEX-133LE-0926-SM-5P9J1 41.7
GTEX-1122O-0926-SM-5N9C9 40.7
GTEX-12696-1826-SM-5EGJS 40.1
GTEX-11I78-0226-SM-5HL6R 39.9
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

56.7

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 56.7
FF:10010-101C1 65,65,76 years, mixed 56.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.