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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:22.1RPKM
FANTOM5:105.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA025770

 

Antibody HPA025948

 

Antibody HPA027341

 

Antibody CAB017785

 

Glial cells

Not detected   Low   Medium   Low  

Neuronal cells

Medium   Medium   Medium   Low  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

22.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 22.1
Samples: 117

Max RPKM: 40.7
Min RPKM: 8.8
Std RPKM: 5.3
Median RPKM: 22.2
GTEX-P44H-0011-R5A-SM-2XCEX 40.7
GTEX-T2IS-0011-R5A-SM-32QP4 34.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 32.4
GTEX-139TT-0011-R5b-SM-5K7W8 32.2
GTEX-T6MN-0011-R5A-SM-32QPD 31.2
GTEX-11H98-0011-R5b-SM-57WCF 30.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 30.4
GTEX-12WSA-0011-R5b-SM-5GU5I 29.7
GTEX-13X6K-0011-R5b-SM-5PNUE 29.5
GTEX-WVLH-0011-R5A-SM-3MJFW 29.5
GTEX-12WSB-0011-R5b-SM-5GU67 28.5
GTEX-TSE9-0011-R5A-SM-3DB7J 28.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 28.3
GTEX-ZUA1-0011-R5b-SM-51MTG 28.3
GTEX-131YS-0011-R5b-SM-5K7YB 28.1
GTEX-QVJO-0011-R5A-SM-2S1QM 27.9
GTEX-UTHO-0011-R5A-SM-3GIJD 27.9
GTEX-12WSC-0011-R5b-SM-5CVNS 27.4
GTEX-132Q8-0011-R5a-SM-5IJDM 27.4
GTEX-PVOW-0011-R5A-SM-32PL7 27.4
GTEX-13G51-0011-R5a-SM-5L3EB 27.2
GTEX-S7SE-0011-R5A-SM-2XCDA 26.5
GTEX-13FLV-0011-R5a-SM-5LZWT 26.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 26.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 25.9
GTEX-WZTO-0011-R5B-SM-3NMC5 25.9
GTEX-1399T-0011-R5b-SM-5IJDK 25.6
GTEX-13CZV-0011-R5a-SM-5K7XA 25.5
GTEX-13OW6-0011-R5a-SM-5O9BK 25.5
GTEX-14BIM-0011-R5b-SM-5S2RM 25.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 25.1
GTEX-N7MT-0011-R5a-SM-2I3G6 24.9
GTEX-R55E-0011-R5A-SM-2TC5N 24.5
GTEX-WWYW-0011-R5A-SM-3NB3E 24.3
GTEX-N7MS-0011-R5a-SM-2HMK8 24.2
GTEX-1313W-0011-R5b-SM-5L3EP 24.0
GTEX-13OVL-0011-R5b-SM-5L3FU 23.9
GTEX-X585-0011-R5A-SM-46MVI 23.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 23.8
GTEX-13X6I-0011-R5a-SM-5PNWW 23.7
GTEX-13X6J-0011-R5b-SM-5PNWT 23.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 23.7
GTEX-QMR6-0011-R5A-SM-32PKT 23.7
GTEX-13NYS-0011-R5a-SM-5MR4D 23.5
GTEX-139T8-0011-R5b-SM-5J1MO 23.4
GTEX-13FXS-0011-R5b-SM-5LZYE 23.1
GTEX-13SLX-0011-R5a-SM-5O9BV 23.1
GTEX-13JUV-0011-R5a-SM-5LZY5 23.0
GTEX-NPJ7-0011-R5a-SM-33HBK 23.0
GTEX-12WSF-0011-R5a-SM-5HL8K 22.9
GTEX-13FLW-0011-R5a-SM-5LZX6 22.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.8
GTEX-13VXU-0011-R5a-SM-5O9D7 22.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 22.7
GTEX-XMD1-0011-R5A-SM-4AT47 22.5
GTEX-13JVG-0011-R5a-SM-5MR4O 22.4
GTEX-145MH-0011-R5a-SM-5P9JT 22.4
GTEX-RU72-0011-R5A-SM-2TF6U 22.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 22.2
GTEX-ZE7O-0011-R5a-SM-57WBO 22.2
GTEX-11GSP-0011-R5a-SM-57WBE 22.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 21.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 21.9
GTEX-13OVH-0011-R5b-SM-5KM4L 21.8
GTEX-13OW7-0011-R5b-SM-5O9DM 21.8
GTEX-145LS-0011-R5a-SM-5SI65 21.7
GTEX-11NV4-0011-R5a-SM-5NQ88 21.5
GTEX-11OF3-0011-R5a-SM-57WB4 21.3
GTEX-12WSD-0011-R5b-SM-5CVNG 21.1
GTEX-RVPU-0011-R5A-SM-2XCAD 21.0
GTEX-13NYB-0011-R5a-SM-5MR45 20.9
GTEX-YFC4-0011-R5a-SM-4RGLR 20.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 20.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 20.7
GTEX-T5JC-0011-R5A-SM-32PLK 20.6
GTEX-14ABY-0011-R5b-SM-5SI7B 20.5
GTEX-WL46-0011-R5A-SM-3LK6V 20.5
GTEX-ZXG5-0011-R5b-SM-57WBN 20.5
GTEX-13O3O-0011-R5b-SM-5KM44 20.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 20.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 20.2
GTEX-144GO-0011-R5a-SM-5PNUR 20.0
GTEX-ZV68-0011-R5a-SM-4YCDW 20.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 19.9
GTEX-12ZZX-0011-R5a-SM-5HL89 19.8
GTEX-OXRN-0011-R5A-SM-2I5EF 19.6
GTEX-NL4W-0011-R5a-SM-2I3GD 19.4
GTEX-13CIG-0011-R5b-SM-5L3F2 19.2
GTEX-13OW5-0011-R5b-SM-5L3FR 18.8
GTEX-1445S-0011-R5a-SM-5PNUS 18.4
GTEX-XOTO-0011-R5A-SM-4B657 18.4
GTEX-X261-0011-R5A-SM-3NMB4 18.2
GTEX-Z93S-0011-R5b-SM-4RGNI 17.9
GTEX-11WQC-0011-R5a-SM-5BC74 17.8
GTEX-14BIN-0011-R5b-SM-5SI78 17.5
GTEX-RVPV-0011-R5A-SM-2TF69 17.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 17.3
GTEX-13S7M-0011-R5b-SM-5P9HS 17.1
GTEX-139TS-0011-R5b-SM-5J2MZ 17.0
GTEX-ZVT3-0011-R5a-SM-51MSI 16.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 16.7
GTEX-X4XX-0011-R5A-SM-46MWN 16.6
GTEX-13112-0011-R5b-SM-5DUV8 16.5
GTEX-OHPN-0011-R5A-SM-2I5FF 16.0
GTEX-144GL-0011-R5b-SM-5PNUJ 15.8
GTEX-NL3H-0011-R5a-SM-2I3GB 15.5
GTEX-YJ89-0011-R5a-SM-4V6GM 13.6
GTEX-11UD1-0011-R5b-SM-5P9FP 13.3
GTEX-S7PM-0011-R5A-SM-3NM8G 13.3
GTEX-13FHP-0011-R5b-SM-5LZY2 12.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 12.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 12.7
GTEX-13CF2-0011-R5a-SM-5LZWS 11.8
GTEX-12WSH-0011-R5b-SM-5P9F3 11.4
GTEX-145MG-0011-R5b-SM-5S2VU 10.4
GTEX-1477Z-0011-R5b-SM-5PNUO 10.3
GTEX-13NZA-0011-R5b-SM-5KM4K 8.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

105.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 105.7
FF:10379-105H1 89 years, female 117.6
FF:10164-103B2 76 years, female 93.8

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