We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
AAAS
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:12.1RPKM
FANTOM5:25.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA040086

 

Glial cells

Low  

Neuronal cells

Low  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

12.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 12.1
Samples: 117

Max RPKM: 17.8
Min RPKM: 5
Std RPKM: 2.7
Median RPKM: 12.4
GTEX-X4XX-0011-R5A-SM-46MWN 17.8
GTEX-WWYW-0011-R5A-SM-3NB3E 17.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 17.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 17.2
GTEX-132Q8-0011-R5a-SM-5IJDM 16.8
GTEX-14BIM-0011-R5b-SM-5S2RM 16.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 16.7
GTEX-XMD1-0011-R5A-SM-4AT47 16.6
GTEX-13OW6-0011-R5a-SM-5O9BK 16.2
GTEX-1399T-0011-R5b-SM-5IJDK 16.0
GTEX-139TS-0011-R5b-SM-5J2MZ 15.8
GTEX-X585-0011-R5A-SM-46MVI 15.7
GTEX-WL46-0011-R5A-SM-3LK6V 15.5
GTEX-13X6K-0011-R5b-SM-5PNUE 15.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 15.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 15.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 15.0
GTEX-R55E-0011-R5A-SM-2TC5N 14.9
GTEX-WZTO-0011-R5B-SM-3NMC5 14.9
GTEX-N7MT-0011-R5a-SM-2I3G6 14.8
GTEX-11GSP-0011-R5a-SM-57WBE 14.7
GTEX-YFC4-0011-R5a-SM-4RGLR 14.7
GTEX-13FLV-0011-R5a-SM-5LZWT 14.6
GTEX-X261-0011-R5A-SM-3NMB4 14.6
GTEX-145MH-0011-R5a-SM-5P9JT 14.2
GTEX-ZE7O-0011-R5a-SM-57WBO 14.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 14.1
GTEX-N7MS-0011-R5a-SM-2HMK8 14.0
GTEX-RVPV-0011-R5A-SM-2TF69 14.0
GTEX-11NV4-0011-R5a-SM-5NQ88 13.9
GTEX-13G51-0011-R5a-SM-5L3EB 13.8
GTEX-13OVH-0011-R5b-SM-5KM4L 13.8
GTEX-13NYB-0011-R5a-SM-5MR45 13.7
GTEX-13X6I-0011-R5a-SM-5PNWW 13.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 13.6
GTEX-13S7M-0011-R5b-SM-5P9HS 13.4
GTEX-13VXU-0011-R5a-SM-5O9D7 13.4
GTEX-13SLX-0011-R5a-SM-5O9BV 13.3
GTEX-QVJO-0011-R5A-SM-2S1QM 13.3
GTEX-RU72-0011-R5A-SM-2TF6U 13.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 13.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 13.2
GTEX-ZXG5-0011-R5b-SM-57WBN 13.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 13.0
GTEX-13OW7-0011-R5b-SM-5O9DM 13.0
GTEX-WVLH-0011-R5A-SM-3MJFW 13.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 12.9
GTEX-XOTO-0011-R5A-SM-4B657 12.9
GTEX-13NYS-0011-R5a-SM-5MR4D 12.8
GTEX-145LS-0011-R5a-SM-5SI65 12.8
GTEX-NL4W-0011-R5a-SM-2I3GD 12.8
GTEX-12WSC-0011-R5b-SM-5CVNS 12.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 12.7
GTEX-12WSF-0011-R5a-SM-5HL8K 12.6
GTEX-QMR6-0011-R5A-SM-32PKT 12.6
GTEX-ZUA1-0011-R5b-SM-51MTG 12.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 12.5
GTEX-139T8-0011-R5b-SM-5J1MO 12.4
GTEX-NL3H-0011-R5a-SM-2I3GB 12.4
GTEX-131YS-0011-R5b-SM-5K7YB 12.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 12.3
GTEX-1313W-0011-R5b-SM-5L3EP 12.2
GTEX-144GO-0011-R5a-SM-5PNUR 12.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 12.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 11.8
GTEX-13OW5-0011-R5b-SM-5L3FR 11.8
GTEX-12ZZX-0011-R5a-SM-5HL89 11.7
GTEX-13FXS-0011-R5b-SM-5LZYE 11.7
GTEX-13JVG-0011-R5a-SM-5MR4O 11.7
GTEX-14ABY-0011-R5b-SM-5SI7B 11.7
GTEX-OHPN-0011-R5A-SM-2I5FF 11.7
GTEX-14BIN-0011-R5b-SM-5SI78 11.5
GTEX-13JUV-0011-R5a-SM-5LZY5 11.2
GTEX-T6MN-0011-R5A-SM-32QPD 11.2
GTEX-ZV68-0011-R5a-SM-4YCDW 11.2
GTEX-13OVL-0011-R5b-SM-5L3FU 11.1
GTEX-NPJ7-0011-R5a-SM-33HBK 11.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 11.0
GTEX-TSE9-0011-R5A-SM-3DB7J 10.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 10.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 10.6
GTEX-13FLW-0011-R5a-SM-5LZX6 10.5
GTEX-13O3O-0011-R5b-SM-5KM44 10.5
GTEX-Z93S-0011-R5b-SM-4RGNI 10.5
GTEX-PVOW-0011-R5A-SM-32PL7 10.4
GTEX-11OF3-0011-R5a-SM-57WB4 10.3
GTEX-13X6J-0011-R5b-SM-5PNWT 10.2
GTEX-S7SE-0011-R5A-SM-2XCDA 10.2
GTEX-ZVT3-0011-R5a-SM-51MSI 10.2
GTEX-13FHP-0011-R5b-SM-5LZY2 10.1
GTEX-13CZV-0011-R5a-SM-5K7XA 10.0
GTEX-T5JC-0011-R5A-SM-32PLK 10.0
GTEX-11H98-0011-R5b-SM-57WCF 9.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 9.5
GTEX-144GL-0011-R5b-SM-5PNUJ 9.5
GTEX-11WQC-0011-R5a-SM-5BC74 9.4
GTEX-12WSA-0011-R5b-SM-5GU5I 9.3
GTEX-12WSB-0011-R5b-SM-5GU67 9.3
GTEX-12WSD-0011-R5b-SM-5CVNG 9.2
GTEX-RVPU-0011-R5A-SM-2XCAD 9.2
GTEX-1445S-0011-R5a-SM-5PNUS 8.9
GTEX-UTHO-0011-R5A-SM-3GIJD 8.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 8.3
GTEX-13CIG-0011-R5b-SM-5L3F2 8.3
GTEX-P44H-0011-R5A-SM-2XCEX 7.8
GTEX-S7PM-0011-R5A-SM-3NM8G 7.8
GTEX-YJ89-0011-R5a-SM-4V6GM 7.8
GTEX-13CF2-0011-R5a-SM-5LZWS 7.6
GTEX-OXRN-0011-R5A-SM-2I5EF 7.6
GTEX-11UD1-0011-R5b-SM-5P9FP 7.5
GTEX-13112-0011-R5b-SM-5DUV8 7.4
GTEX-139TT-0011-R5b-SM-5K7W8 7.2
GTEX-12WSH-0011-R5b-SM-5P9F3 7.0
GTEX-1477Z-0011-R5b-SM-5PNUO 6.8
GTEX-T2IS-0011-R5A-SM-32QP4 6.3
GTEX-13NZA-0011-R5b-SM-5KM4K 6.2
GTEX-145MG-0011-R5b-SM-5S2VU 5.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

25.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 25.1
FF:10164-103B2 76 years, female 28.1
FF:10379-105H1 89 years, female 22.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.