We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CABIN1
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:9.2RPKM
FANTOM5:45.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA043296

 

Glial cells

Not detected  

Neuronal cells

Medium  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

9.2

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 9.2
Samples: 117

Max RPKM: 14.1
Min RPKM: 3.4
Std RPKM: 2.6
Median RPKM: 9.5
GTEX-13G51-0011-R5a-SM-5L3EB 14.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 13.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 13.6
GTEX-X585-0011-R5A-SM-46MVI 13.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 13.2
GTEX-XMD1-0011-R5A-SM-4AT47 13.0
GTEX-13S7M-0011-R5b-SM-5P9HS 12.7
GTEX-13OW6-0011-R5a-SM-5O9BK 12.6
GTEX-1399T-0011-R5b-SM-5IJDK 12.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 12.4
GTEX-11GSP-0011-R5a-SM-57WBE 12.3
GTEX-13FXS-0011-R5b-SM-5LZYE 12.3
GTEX-13OW5-0011-R5b-SM-5L3FR 12.3
GTEX-13X6K-0011-R5b-SM-5PNUE 12.3
GTEX-145MH-0011-R5a-SM-5P9JT 12.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 12.2
GTEX-13FLW-0011-R5a-SM-5LZX6 12.1
GTEX-131YS-0011-R5b-SM-5K7YB 11.8
GTEX-13SLX-0011-R5a-SM-5O9BV 11.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 11.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 11.7
GTEX-13OVL-0011-R5b-SM-5L3FU 11.6
GTEX-N7MS-0011-R5a-SM-2HMK8 11.6
GTEX-RVPV-0011-R5A-SM-2TF69 11.5
GTEX-12WSC-0011-R5b-SM-5CVNS 11.4
GTEX-WWYW-0011-R5A-SM-3NB3E 11.4
GTEX-OHPN-0011-R5A-SM-2I5FF 11.3
GTEX-S7SE-0011-R5A-SM-2XCDA 11.3
GTEX-WL46-0011-R5A-SM-3LK6V 11.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 11.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 11.2
GTEX-13VXU-0011-R5a-SM-5O9D7 11.2
GTEX-13X6J-0011-R5b-SM-5PNWT 11.2
GTEX-145LS-0011-R5a-SM-5SI65 11.2
GTEX-13JUV-0011-R5a-SM-5LZY5 11.0
GTEX-14BIM-0011-R5b-SM-5S2RM 11.0
GTEX-13OVH-0011-R5b-SM-5KM4L 10.9
GTEX-13NYS-0011-R5a-SM-5MR4D 10.7
GTEX-N7MT-0011-R5a-SM-2I3G6 10.7
GTEX-13X6I-0011-R5a-SM-5PNWW 10.5
GTEX-NL4W-0011-R5a-SM-2I3GD 10.5
GTEX-WZTO-0011-R5B-SM-3NMC5 10.5
GTEX-132Q8-0011-R5a-SM-5IJDM 10.4
GTEX-13O3O-0011-R5b-SM-5KM44 10.3
GTEX-ZUA1-0011-R5b-SM-51MTG 10.3
GTEX-13FLV-0011-R5a-SM-5LZWT 10.2
GTEX-RVPU-0011-R5A-SM-2XCAD 10.2
GTEX-14ABY-0011-R5b-SM-5SI7B 10.1
GTEX-ZE7O-0011-R5a-SM-57WBO 9.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 9.8
GTEX-13NYB-0011-R5a-SM-5MR45 9.7
GTEX-13OW7-0011-R5b-SM-5O9DM 9.7
GTEX-11OF3-0011-R5a-SM-57WB4 9.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 9.6
GTEX-WVLH-0011-R5A-SM-3MJFW 9.6
GTEX-12WSF-0011-R5a-SM-5HL8K 9.5
GTEX-1313W-0011-R5b-SM-5L3EP 9.5
GTEX-TSE9-0011-R5A-SM-3DB7J 9.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 9.5
GTEX-T5JC-0011-R5A-SM-32PLK 9.4
GTEX-Z93S-0011-R5b-SM-4RGNI 9.4
GTEX-QVJO-0011-R5A-SM-2S1QM 9.3
GTEX-T6MN-0011-R5A-SM-32QPD 9.3
GTEX-139TS-0011-R5b-SM-5J2MZ 9.2
GTEX-12WSD-0011-R5b-SM-5CVNG 9.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 9.1
GTEX-R55E-0011-R5A-SM-2TC5N 9.0
GTEX-11NV4-0011-R5a-SM-5NQ88 8.8
GTEX-X4XX-0011-R5A-SM-46MWN 8.8
GTEX-11H98-0011-R5b-SM-57WCF 8.7
GTEX-13JVG-0011-R5a-SM-5MR4O 8.7
GTEX-RU72-0011-R5A-SM-2TF6U 8.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 8.6
GTEX-14BIN-0011-R5b-SM-5SI78 8.6
GTEX-144GO-0011-R5a-SM-5PNUR 8.5
GTEX-YFC4-0011-R5a-SM-4RGLR 8.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 8.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 8.2
GTEX-P44H-0011-R5A-SM-2XCEX 8.2
GTEX-XOTO-0011-R5A-SM-4B657 8.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 8.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 8.0
GTEX-13CZV-0011-R5a-SM-5K7XA 7.9
GTEX-12WSB-0011-R5b-SM-5GU67 7.8
GTEX-PVOW-0011-R5A-SM-32PL7 7.8
GTEX-X261-0011-R5A-SM-3NMB4 7.8
GTEX-ZXG5-0011-R5b-SM-57WBN 7.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 7.6
GTEX-12ZZX-0011-R5a-SM-5HL89 7.5
GTEX-UTHO-0011-R5A-SM-3GIJD 7.2
GTEX-NL3H-0011-R5a-SM-2I3GB 7.0
GTEX-139TT-0011-R5b-SM-5K7W8 6.9
GTEX-YJ89-0011-R5a-SM-4V6GM 6.8
GTEX-13CIG-0011-R5b-SM-5L3F2 6.3
GTEX-144GL-0011-R5b-SM-5PNUJ 6.2
GTEX-13FHP-0011-R5b-SM-5LZY2 6.0
GTEX-11WQC-0011-R5a-SM-5BC74 5.8
GTEX-OXRN-0011-R5A-SM-2I5EF 5.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 5.8
GTEX-QMR6-0011-R5A-SM-32PKT 5.6
GTEX-T2IS-0011-R5A-SM-32QP4 5.6
GTEX-ZV68-0011-R5a-SM-4YCDW 5.6
GTEX-13112-0011-R5b-SM-5DUV8 5.4
GTEX-1445S-0011-R5a-SM-5PNUS 5.4
GTEX-1477Z-0011-R5b-SM-5PNUO 5.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 5.3
GTEX-ZVT3-0011-R5a-SM-51MSI 5.3
GTEX-139T8-0011-R5b-SM-5J1MO 5.0
GTEX-11UD1-0011-R5b-SM-5P9FP 4.8
GTEX-12WSH-0011-R5b-SM-5P9F3 4.5
GTEX-NPJ7-0011-R5a-SM-33HBK 4.5
GTEX-S7PM-0011-R5A-SM-3NM8G 4.2
GTEX-13CF2-0011-R5a-SM-5LZWS 4.1
GTEX-12WSA-0011-R5b-SM-5GU5I 4.0
GTEX-13NZA-0011-R5b-SM-5KM4K 3.4
GTEX-145MG-0011-R5b-SM-5S2VU 3.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

45.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 45.9
FF:10164-103B2 76 years, female 49.8
FF:10379-105H1 89 years, female 42.0

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.