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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SOX10
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SOX10

Gene description

SRY (sex determining region Y)-box 10

Protein class

Disease related genes
Predicted intracellular proteins
Transcription factors

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (cerebral cortex, salivary gland)
GTEx:Mixed
FANTOM5:Tissue enhanced (retina, salivary gland)

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression mainly in glial cells and salivary gland.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA068898 , CAB003171
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
N/A
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Salivary gland

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (cerebral cortex, salivary gland)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (retina, salivary gland)

GENE INFORMATION

Gene name

SOX10 (HGNC Symbol)

Synonyms

DOM, WS2E, WS4

Description

SRY (sex determining region Y)-box 10 (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after forming a protein complex with other proteins. This protein acts as a nucleocytoplasmic shuttle protein and is important for neural crest and peripheral nervous system development. Mutations in this gene are associated with Waardenburg-Shah and Waardenburg-Hirschsprung disease. [provided by RefSeq, Jul 2008]

Chromosome

22

Cytoband

q13.1

Chromosome location (bp)

37970686 - 37987422

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000100146 (version 83.38)

Entrez gene

6663

UniProt

P56693 (UniProt - Evidence at protein level)

neXtProt

NX_P56693

Antibodypedia

SOX10 antibodies

PROTEIN BROWSER

SOX10-001
SOX10-002
SOX10-003
SOX10-004

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SOX10-001
ENSP00000354130
ENST00000360880
P56693 [Direct mapping]
Transcription factor SOX-10
A0A024R1N6 [Target identity:100%; Query identity:100%]
SRY (Sex determining region Y)-box 10, isoform CRA_a
Show all
Predicted intracellular proteins
Transcription factors
   Other all-alpha-helical DNA-binding domains
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0009653 [anatomical structure morphogenesis]
GO:0042802 [identical protein binding]
Show all
466 aa
49.9 kDa
No 0
SOX10-002
ENSP00000380093
ENST00000396884
P56693 [Direct mapping]
Transcription factor SOX-10
A0A024R1N6 [Target identity:100%; Query identity:100%]
SRY (Sex determining region Y)-box 10, isoform CRA_a
Show all
Predicted intracellular proteins
Transcription factors
   Other all-alpha-helical DNA-binding domains
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000978 [RNA polymerase II core promoter proximal region sequence-specific DNA binding]
GO:0000980 [RNA polymerase II distal enhancer sequence-specific DNA binding]
GO:0000981 [RNA polymerase II transcription factor activity, sequence-specific DNA binding]
GO:0001190 [transcriptional activator activity, RNA polymerase II transcription factor binding]
GO:0001701 [in utero embryonic development]
GO:0001755 [neural crest cell migration]
GO:0002052 [positive regulation of neuroblast proliferation]
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0003705 [transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding]
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription from RNA polymerase II promoter]
GO:0006366 [transcription from RNA polymerase II promoter]
GO:0007422 [peripheral nervous system development]
GO:0008134 [transcription factor binding]
GO:0009653 [anatomical structure morphogenesis]
GO:0014015 [positive regulation of gliogenesis]
GO:0030154 [cell differentiation]
GO:0030318 [melanocyte differentiation]
GO:0031315 [extrinsic component of mitochondrial outer membrane]
GO:0032808 [lacrimal gland development]
GO:0042802 [identical protein binding]
GO:0043066 [negative regulation of apoptotic process]
GO:0044212 [transcription regulatory region DNA binding]
GO:0045892 [negative regulation of transcription, DNA-templated]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0048469 [cell maturation]
GO:0048484 [enteric nervous system development]
GO:0048546 [digestive tract morphogenesis]
GO:0048589 [developmental growth]
GO:0048709 [oligodendrocyte differentiation]
GO:0048863 [stem cell differentiation]
GO:0061138 [morphogenesis of a branching epithelium]
GO:0090090 [negative regulation of canonical Wnt signaling pathway]
Show all
466 aa
49.9 kDa
No 0
SOX10-003
ENSP00000414853
ENST00000427770
A6PVD3 [Direct mapping]
Transcription factor SOX-10
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
213 aa
23.3 kDa
No 0
SOX10-004
ENSP00000399777
ENST00000446929
H0Y5N4 [Direct mapping]
Transcription factor SOX-10
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
179 aa
19.7 kDa
No 0

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