We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
DDX17
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:31.3RPKM
FANTOM5:373.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA063142

 

Antibody CAB024908

 

Glial cells

Low   Not detected  

Neuronal cells

Low   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

31.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 31.3
Samples: 117

Max RPKM: 84.8
Min RPKM: 6.6
Std RPKM: 13.4
Median RPKM: 30.9
GTEX-XMD1-0011-R5A-SM-4AT47 84.8
GTEX-13X6I-0011-R5a-SM-5PNWW 65.1
GTEX-PVOW-0011-R5A-SM-32PL7 60.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 56.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 55.1
GTEX-13OW6-0011-R5a-SM-5O9BK 54.9
GTEX-X4XX-0011-R5A-SM-46MWN 53.9
GTEX-WZTO-0011-R5B-SM-3NMC5 52.5
GTEX-S7SE-0011-R5A-SM-2XCDA 52.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 51.7
GTEX-131YS-0011-R5b-SM-5K7YB 51.4
GTEX-11GSP-0011-R5a-SM-57WBE 50.2
GTEX-WL46-0011-R5A-SM-3LK6V 50.0
GTEX-N7MS-0011-R5a-SM-2HMK8 49.3
GTEX-R55E-0011-R5A-SM-2TC5N 46.0
GTEX-13S7M-0011-R5b-SM-5P9HS 44.6
GTEX-QMR6-0011-R5A-SM-32PKT 44.4
GTEX-QVJO-0011-R5A-SM-2S1QM 44.2
GTEX-RVPV-0011-R5A-SM-2TF69 43.7
GTEX-WVLH-0011-R5A-SM-3MJFW 43.6
GTEX-P44H-0011-R5A-SM-2XCEX 43.1
GTEX-WWYW-0011-R5A-SM-3NB3E 42.7
GTEX-N7MT-0011-R5a-SM-2I3G6 42.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40.6
GTEX-139TS-0011-R5b-SM-5J2MZ 40.3
GTEX-145MH-0011-R5a-SM-5P9JT 40.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 39.4
GTEX-145LS-0011-R5a-SM-5SI65 39.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 38.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 38.3
GTEX-132Q8-0011-R5a-SM-5IJDM 38.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 37.9
GTEX-14ABY-0011-R5b-SM-5SI7B 37.9
GTEX-ZE7O-0011-R5a-SM-57WBO 37.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 36.9
GTEX-13OVL-0011-R5b-SM-5L3FU 36.7
GTEX-ZXG5-0011-R5b-SM-57WBN 36.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 36.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 35.9
GTEX-13O3O-0011-R5b-SM-5KM44 35.8
GTEX-12WSD-0011-R5b-SM-5CVNG 35.4
GTEX-13VXU-0011-R5a-SM-5O9D7 34.9
GTEX-13G51-0011-R5a-SM-5L3EB 34.8
GTEX-YFC4-0011-R5a-SM-4RGLR 34.7
GTEX-1313W-0011-R5b-SM-5L3EP 34.6
GTEX-NL3H-0011-R5a-SM-2I3GB 34.5
GTEX-11H98-0011-R5b-SM-57WCF 34.3
GTEX-NL4W-0011-R5a-SM-2I3GD 33.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 33.4
GTEX-14BIM-0011-R5b-SM-5S2RM 33.1
GTEX-144GO-0011-R5a-SM-5PNUR 32.9
GTEX-13X6J-0011-R5b-SM-5PNWT 32.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 31.8
GTEX-X585-0011-R5A-SM-46MVI 31.5
GTEX-13FXS-0011-R5b-SM-5LZYE 31.3
GTEX-T5JC-0011-R5A-SM-32PLK 31.2
GTEX-11OF3-0011-R5a-SM-57WB4 31.1
GTEX-11NV4-0011-R5a-SM-5NQ88 31.0
GTEX-T6MN-0011-R5A-SM-32QPD 30.9
GTEX-1445S-0011-R5a-SM-5PNUS 30.5
GTEX-Z93S-0011-R5b-SM-4RGNI 30.5
GTEX-13OW7-0011-R5b-SM-5O9DM 30.1
GTEX-13JVG-0011-R5a-SM-5MR4O 29.4
GTEX-RU72-0011-R5A-SM-2TF6U 29.4
GTEX-13OW5-0011-R5b-SM-5L3FR 29.1
GTEX-14BIN-0011-R5b-SM-5SI78 28.9
GTEX-13SLX-0011-R5a-SM-5O9BV 28.8
GTEX-12WSF-0011-R5a-SM-5HL8K 28.5
GTEX-OHPN-0011-R5A-SM-2I5FF 28.3
GTEX-13NYS-0011-R5a-SM-5MR4D 27.4
GTEX-RVPU-0011-R5A-SM-2XCAD 27.3
GTEX-13OVH-0011-R5b-SM-5KM4L 27.2
GTEX-NPJ7-0011-R5a-SM-33HBK 27.2
GTEX-UTHO-0011-R5A-SM-3GIJD 27.2
GTEX-OXRN-0011-R5A-SM-2I5EF 27.1
GTEX-13JUV-0011-R5a-SM-5LZY5 26.8
GTEX-XOTO-0011-R5A-SM-4B657 26.7
GTEX-13CZV-0011-R5a-SM-5K7XA 26.5
GTEX-1399T-0011-R5b-SM-5IJDK 26.2
GTEX-T2IS-0011-R5A-SM-32QP4 25.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 25.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 25.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 24.8
GTEX-13112-0011-R5b-SM-5DUV8 23.1
GTEX-ZVT3-0011-R5a-SM-51MSI 21.2
GTEX-12WSB-0011-R5b-SM-5GU67 21.1
GTEX-12WSC-0011-R5b-SM-5CVNS 21.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 20.7
GTEX-13FLW-0011-R5a-SM-5LZX6 20.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 20.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 20.1
GTEX-X261-0011-R5A-SM-3NMB4 20.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 19.8
GTEX-S7PM-0011-R5A-SM-3NM8G 19.8
GTEX-144GL-0011-R5b-SM-5PNUJ 19.0
GTEX-12ZZX-0011-R5a-SM-5HL89 18.8
GTEX-ZUA1-0011-R5b-SM-51MTG 18.6
GTEX-11WQC-0011-R5a-SM-5BC74 18.2
GTEX-13X6K-0011-R5b-SM-5PNUE 18.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 17.2
GTEX-13FLV-0011-R5a-SM-5LZWT 16.4
GTEX-11UD1-0011-R5b-SM-5P9FP 16.0
GTEX-1477Z-0011-R5b-SM-5PNUO 16.0
GTEX-13FHP-0011-R5b-SM-5LZY2 15.9
GTEX-12WSA-0011-R5b-SM-5GU5I 14.2
GTEX-13NYB-0011-R5a-SM-5MR45 14.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 12.5
GTEX-ZV68-0011-R5a-SM-4YCDW 11.3
GTEX-13CF2-0011-R5a-SM-5LZWS 11.1
GTEX-TSE9-0011-R5A-SM-3DB7J 11.1
GTEX-YJ89-0011-R5a-SM-4V6GM 11.1
GTEX-13CIG-0011-R5b-SM-5L3F2 10.6
GTEX-13NZA-0011-R5b-SM-5KM4K 10.3
GTEX-139TT-0011-R5b-SM-5K7W8 10.0
GTEX-139T8-0011-R5b-SM-5J1MO 8.8
GTEX-145MG-0011-R5b-SM-5S2VU 7.4
GTEX-12WSH-0011-R5b-SM-5P9F3 6.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

373.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 373.2
FF:10164-103B2 76 years, female 477.5
FF:10379-105H1 89 years, female 268.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.