Tissue expression of SDR39U1 - Summary - The Human Protein Atlas

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SDR39U1

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	SDR39U1
Gene description	Short chain dehydrogenase/reductase family 39U, member 1
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	11
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression, most abundant in smooth muscle.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 1 antibody. HPA044294
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	SDR39U1 (HGNC Symbol)
Synonyms	C14orf124, HCDI
Description	Short chain dehydrogenase/reductase family 39U, member 1 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the short-chain dehydrogenases/reductases (SDR) superfamily, which includes both classical and extended types. The encoded protein represents an extended type, with similarity to epimerases. Alternatively spliced transcript variants that encode different protein isoforms have been described. [provided by RefSeq, Mar 2014]
Chromosome	14
Cytoband	q12
Chromosome location (bp)	24439766 - 24442905
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000100445 (version 83.38)
Entrez gene	56948
UniProt	Q9NRG7 (UniProt - Evidence at protein level)
neXtProt	NX_Q9NRG7
Antibodypedia	SDR39U1 antibodies

PROTEIN BROWSER

SDR39U1-001	SDR39U1-002	SDR39U1-007	SDR39U1-008	SDR39U1-009	SDR39U1-015	SDR39U1-017	SDR39U1-018	SDR39U1-021	SDR39U1-022	SDR39U1-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SDR39U1-001 ENSP00000382327 ENST00000399395	Q9NRG7 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003824 [catalytic activity] GO:0005634 [nucleus] GO:0016491 [oxidoreductase activity] GO:0050662 [coenzyme binding] GO:0055114 [oxidation-reduction process] Show all	293 aa 31.1 kDa	No	0
SDR39U1-002 ENSP00000452499 ENST00000553930	G3V5T1 [Direct mapping] Epimerase family protein SDR39U1 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		168 aa 17.5 kDa	No	0
SDR39U1-007 ENSP00000452438 ENST00000554698	Q86TZ5 [Direct mapping] Epimerase family protein SDR39U1; Full-length cDNA clone CS0DC001YO07 of Neuroblastoma of Homo sapiens (human) Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		185 aa 19.6 kDa	No	0
SDR39U1-008 ENSP00000446077 ENST00000538105	F6RWC2 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		211 aa 22.4 kDa	No	0
SDR39U1-009 ENSP00000450946 ENST00000555355	G3V2Z6 [Direct mapping] Epimerase family protein SDR39U1 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		129 aa 13.1 kDa	No	0
SDR39U1-015 ENSP00000452076 ENST00000553343	G3V4Z0 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		170 aa 18 kDa	No	0
SDR39U1-017 ENSP00000450915 ENST00000556249	H0YJ71 [Direct mapping] Epimerase family protein SDR39U1 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		185 aa 19.6 kDa	No	0
SDR39U1-018 ENSP00000451903 ENST00000555365	G3V4N6 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		126 aa 13.3 kDa	No	0
SDR39U1-021 ENSP00000451593 ENST00000555225	G3V451 [Direct mapping] Epimerase family protein SDR39U1 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		95 aa 10 kDa	No	0
SDR39U1-022 ENSP00000451275 ENST00000556523	G3V3J5 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		67 aa 6.9 kDa	No	0
SDR39U1-201 ENSP00000382322 ENST00000399390	Q9NRG7 [Direct mapping] Epimerase family protein SDR39U1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005634 [nucleus] GO:0016491 [oxidoreductase activity] GO:0055114 [oxidation-reduction process] Show all	319 aa 34.7 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.