We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SRP54
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:41.2TPM
GTEx:16.2RPKM
FANTOM5:35.3Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:High
Myoepithelial cells:Medium
 

Antibody staining

Antibody HPA048977

 

Adipocytes

Not detected  

Glandular cells

High  

Myoepithelial cells

Medium  
 
 
 

BREAST - HPA RNA-seq

Average TPM

41.2

overview Female, age 52
Sample 1
TPM: 32.2
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 37.9
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 53.8
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 41.0
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM

16.2

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 16.2
Samples: 214

Max RPKM: 27.2
Min RPKM: 10.6
Std RPKM: 3
Median RPKM: 15.9
GTEX-VJWN-0726-SM-3GIJ8 27.2
GTEX-QEG5-0726-SM-4R1JQ 25.6
GTEX-W5X1-2326-SM-3GIL6 24.9
GTEX-R55F-1726-SM-2TF4R 24.7
GTEX-11TUW-1826-SM-5BC5D 23.1
GTEX-Y5LM-1726-SM-4VDSX 23.1
GTEX-XUZC-1626-SM-4BRVP 23.0
GTEX-XOT4-0726-SM-4GIAW 22.8
GTEX-11WQK-2426-SM-5GU5C 22.6
GTEX-ZU9S-1926-SM-5NQBP 22.4
GTEX-WYVS-1726-SM-3NMAY 22.0
GTEX-ZY6K-1626-SM-5GZWV 22.0
GTEX-T6MN-0726-SM-32PML 21.9
GTEX-11TT1-2126-SM-5GU5Y 21.5
GTEX-13N11-1726-SM-5J1OJ 21.5
GTEX-XYKS-1326-SM-4BRUN 21.5
GTEX-ZF2S-2026-SM-5E461 21.5
GTEX-QEL4-2126-SM-447AE 21.4
GTEX-11EMC-2026-SM-5A5JV 21.1
GTEX-11PRG-0826-SM-5EQ6A 20.7
GTEX-ZVTK-0326-SM-51MRR 20.7
GTEX-ZTTD-1026-SM-51MRD 20.6
GTEX-ZTX8-1226-SM-4YCE9 20.2
GTEX-VUSG-2226-SM-4KKZO 20.1
GTEX-13CF2-2026-SM-5K7VI 19.8
GTEX-13O3O-0826-SM-5K7WE 19.7
GTEX-146FH-0826-SM-5SI8T 19.7
GTEX-U3ZH-1426-SM-4DXSR 19.6
GTEX-1211K-1926-SM-5EQLB 19.5
GTEX-X4EP-2926-SM-3P5YQ 19.5
GTEX-13FHO-0826-SM-5L3E8 19.4
GTEX-13FTY-2226-SM-5J1ND 19.4
GTEX-147F4-2826-SM-5NQBN 19.4
GTEX-WYJK-1326-SM-3NB2T 19.4
GTEX-ZF29-1926-SM-5S2P1 19.4
GTEX-11P7K-0726-SM-5EGKX 19.2
GTEX-TML8-1226-SM-32QON 19.1
GTEX-111YS-1926-SM-5GICC 19.0
GTEX-WYBS-0926-SM-3NM94 19.0
GTEX-13NZ9-1026-SM-5MR5K 18.9
GTEX-13QIC-2326-SM-5LU5N 18.9
GTEX-XBED-1626-SM-47JYN 18.9
GTEX-QDT8-0626-SM-48TYW 18.8
GTEX-ZV7C-1826-SM-5NQ83 18.6
GTEX-ZXES-0826-SM-5E43C 18.6
GTEX-R3RS-0626-SM-48FE1 18.5
GTEX-T5JW-2026-SM-4DM63 18.5
GTEX-13PL6-2926-SM-5L3I2 18.4
GTEX-11GS4-2126-SM-5A5KR 18.3
GTEX-14ABY-2126-SM-5QGQZ 18.3
GTEX-ZPIC-1126-SM-5BC7F 18.2
GTEX-Y8LW-1626-SM-5IFHX 18.1
GTEX-139TU-0626-SM-5KM3X 17.9
GTEX-T5JC-2126-SM-32PMO 17.9
GTEX-WOFL-0826-SM-3MJG1 17.9
GTEX-12ZZX-1126-SM-5EGKB 17.8
GTEX-SIU7-1626-SM-4BRUK 17.8
GTEX-WRHU-0326-SM-3MJFY 17.7
GTEX-ZZPU-0626-SM-5E43T 17.7
GTEX-WXYG-2226-SM-4E3IM 17.6
GTEX-Y114-2026-SM-4TT7L 17.6
GTEX-ZVT2-1826-SM-5NQ8W 17.6
GTEX-SE5C-2126-SM-4BRUJ 17.5
GTEX-ZAJG-0626-SM-5HL8X 17.5
GTEX-U412-1826-SM-4DXTJ 17.4
GTEX-X261-0626-SM-3NMD9 17.4
GTEX-ZYFC-0826-SM-5E44K 17.4
GTEX-13D11-1026-SM-5IJFB 17.3
GTEX-11P81-1926-SM-5BC53 17.2
GTEX-1269C-2426-SM-5FQSN 17.2
GTEX-13OW5-2226-SM-5L3HC 17.1
GTEX-RUSQ-2026-SM-4GIAK 17.1
GTEX-S341-1526-SM-4AD6K 17.1
GTEX-T2IS-1526-SM-32QPR 17.0
GTEX-X15G-1626-SM-3NMB3 16.9
GTEX-Y3I4-1526-SM-4TT7K 16.9
GTEX-ZVZQ-0826-SM-51MRF 16.9
GTEX-12WSM-1726-SM-5BC6J 16.8
GTEX-Y3IK-2326-SM-4WWDT 16.8
GTEX-ZVE2-1226-SM-5NQ8R 16.8
GTEX-11DXW-0626-SM-5N9ER 16.7
GTEX-1117F-2826-SM-5GZXL 16.6
GTEX-13O3P-0826-SM-5L3DH 16.6
GTEX-13OW8-0226-SM-5K7UP 16.6
GTEX-13W3W-1226-SM-5LU4H 16.6
GTEX-11DZ1-0326-SM-5N9BN 16.5
GTEX-1314G-1226-SM-5BC6D 16.5
GTEX-UPK5-2326-SM-3P5Z8 16.5
GTEX-Y5V5-2126-SM-4WWFO 16.5
GTEX-S7SE-0826-SM-4AT4D 16.4
GTEX-TKQ2-1826-SM-33HB2 16.4
GTEX-1122O-1226-SM-5H113 16.3
GTEX-11EI6-0626-SM-5985T 16.3
GTEX-11WQC-1726-SM-5GU4W 16.3
GTEX-S32W-2026-SM-4AD6E 16.3
GTEX-S4P3-1326-SM-4AD6V 16.3
GTEX-ZA64-1526-SM-5CVMD 16.3
GTEX-133LE-1726-SM-5K7VQ 16.2
GTEX-TMMY-0726-SM-33HBE 16.2
GTEX-132Q8-1426-SM-5EGK7 16.1
GTEX-13NZ8-0126-SM-5IJCT 16.1
GTEX-REY6-2426-SM-48FF5 16.1
GTEX-YFC4-1426-SM-5IFJG 16.1
GTEX-11EM3-1326-SM-5N9C6 16.0
GTEX-Q2AG-0326-SM-48U1O 16.0
GTEX-T2YK-2226-SM-32QPT 16.0
GTEX-ZC5H-2626-SM-5J2MG 16.0
GTEX-1192X-2326-SM-5987X 15.9
GTEX-13NZB-2126-SM-5MR4Y 15.9
GTEX-XV7Q-2326-SM-4BRVZ 15.9
GTEX-145LT-0726-SM-5S2VM 15.7
GTEX-WI4N-1426-SM-3LK7H 15.7
GTEX-12WSK-2226-SM-5GCO5 15.6
GTEX-RU72-0626-SM-46MUI 15.6
GTEX-UJHI-1426-SM-3DB9C 15.6
GTEX-XMD2-0926-SM-4WWEF 15.5
GTEX-11EQ9-1826-SM-5Q5AJ 15.4
GTEX-1313W-0826-SM-5EQ4T 15.4
GTEX-131YS-0626-SM-5EGKL 15.4
GTEX-11O72-2126-SM-5N9FO 15.3
GTEX-RWS6-1926-SM-47JXY 15.3
GTEX-S33H-0326-SM-4AD6N 15.3
GTEX-S4UY-0726-SM-4AD6X 15.3
GTEX-Y111-2026-SM-4SOJA 15.3
GTEX-Y8E4-1626-SM-5S2MW 15.3
GTEX-11NV4-2026-SM-5N9DG 15.2
GTEX-131XW-0726-SM-5EGK3 15.2
GTEX-ZEX8-2226-SM-57WC6 15.2
GTEX-ZVT4-1026-SM-57WC4 15.2
GTEX-ZYT6-0126-SM-5E45J 15.2
GTEX-ZYW4-0826-SM-5GIDG 15.2
GTEX-132AR-0826-SM-5EGK6 15.1
GTEX-1399U-1826-SM-5PNZ1 15.1
GTEX-UTHO-1026-SM-3GAF7 15.1
GTEX-ZF3C-2326-SM-5S2MZ 15.1
GTEX-11ONC-2126-SM-5HL6E 14.9
GTEX-145MN-1926-SM-5SIAI 14.9
GTEX-13113-1726-SM-5GCOO 14.8
GTEX-U8XE-0826-SM-4E3J1 14.8
GTEX-WY7C-2726-SM-3NB3P 14.7
GTEX-YFCO-1826-SM-4W1YH 14.7
GTEX-145ME-1526-SM-5Q5F2 14.6
GTEX-TKQ1-0226-SM-33HB5 14.6
GTEX-Y9LG-1426-SM-5IFJZ 14.6
GTEX-ZYWO-2326-SM-5GZY4 14.6
GTEX-14753-2426-SM-5LU8U 14.5
GTEX-U3ZN-1926-SM-4DXSG 14.5
GTEX-WFON-1826-SM-3GILG 14.5
GTEX-ZV6S-1826-SM-5NQ8D 14.4
GTEX-11GSO-1926-SM-5A5K3 14.3
GTEX-13CF3-2126-SM-5IFJP 14.3
GTEX-13FTW-1426-SM-5LZWZ 14.3
GTEX-11P82-1326-SM-5HL62 14.2
GTEX-12KS4-0126-SM-5Q5A5 14.2
GTEX-Y5V6-2126-SM-4WWFX 14.1
GTEX-11DXY-2326-SM-5GICW 14.0
GTEX-13S86-1226-SM-5S2OA 14.0
GTEX-YEC3-1026-SM-5IFI5 14.0
GTEX-ZLFU-2126-SM-4WWEV 14.0
GTEX-12WSN-1326-SM-5GCNT 13.9
GTEX-14AS3-1626-SM-5S2OY 13.9
GTEX-117XS-1926-SM-5GICO 13.8
GTEX-13N1W-0626-SM-5MR4U 13.8
GTEX-13O3Q-2226-SM-5KM4O 13.8
GTEX-13W46-0826-SM-5LU3H 13.8
GTEX-145MO-0826-SM-5NQBL 13.8
GTEX-14E6E-1326-SM-5S2NR 13.8
GTEX-T6MO-0326-SM-32QOK 13.8
GTEX-XUJ4-1926-SM-4BOOV 13.8
GTEX-ZDTT-2126-SM-5S2OJ 13.8
GTEX-139T6-1626-SM-5PNYZ 13.6
GTEX-144GL-2026-SM-5LU3O 13.6
GTEX-X4XY-0926-SM-4E3JD 13.6
GTEX-XUW1-2326-SM-4BOO5 13.6
GTEX-YJ8O-2226-SM-5IFHW 13.6
GTEX-12WSB-0626-SM-59HJO 13.5
GTEX-ZUA1-1526-SM-59HLS 13.5
GTEX-11LCK-2426-SM-5HL5F 13.4
GTEX-139T8-0826-SM-5L3DE 13.4
GTEX-144GM-0926-SM-5O994 13.4
GTEX-XMD1-0826-SM-4AT52 13.4
GTEX-11NSD-0926-SM-5N9DR 13.3
GTEX-132NY-0826-SM-5K7Y7 13.3
GTEX-QMRM-1626-SM-4R1KV 13.3
GTEX-R53T-1526-SM-48FEK 13.3
GTEX-ZLV1-1426-SM-4WWES 13.3
GTEX-ZAB4-2526-SM-5HL8M 13.0
GTEX-12BJ1-1826-SM-5HL9N 12.9
GTEX-XQ8I-2426-SM-4WAXY 12.9
GTEX-YB5K-1626-SM-5IFIN 12.9
GTEX-117YX-1426-SM-5H12H 12.8
GTEX-ZQUD-1926-SM-51MSA 12.8
GTEX-11ZUS-0826-SM-5FQUY 12.7
GTEX-13O61-1826-SM-5KM4I 12.7
GTEX-13PVQ-1026-SM-5KM3M 12.7
GTEX-ZDXO-0126-SM-5S2ND 12.6
GTEX-11OF3-1926-SM-59889 12.5
GTEX-XQ3S-1326-SM-4BOPQ 12.4
GTEX-ZDYS-1126-SM-5K7UB 12.3
GTEX-S4Q7-1126-SM-4AD6R 12.2
GTEX-13FTX-1126-SM-5N9EN 12.1
GTEX-11ZTT-2326-SM-5EQLG 12.0
GTEX-ZWKS-2826-SM-5NQ74 12.0
GTEX-R55D-0826-SM-48FEA 11.9
GTEX-QVJO-1826-SM-447C9 11.8
GTEX-11I78-2226-SM-5PNYA 11.7
GTEX-XGQ4-0926-SM-4AT4U 11.7
GTEX-YB5E-1726-SM-5IFJ3 11.3
GTEX-11DXZ-1926-SM-5GZZL 11.2
GTEX-ZZ64-1226-SM-5E43R 11.2
GTEX-ZQG8-0726-SM-5P9H9 11.1
GTEX-ZT9W-2026-SM-51MRA 11.1
GTEX-XMK1-1126-SM-4IHJ8 10.7
GTEX-PSDG-1626-SM-48TCQ 10.6
Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million

35.3

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 35.3
FF:10080-102A8 77 years, female 35.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.