We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SYP
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:51.5RPKM
FANTOM5:281.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA002858

 

Antibody CAB000076

 

Antibody CAB055505

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

51.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 51.5
Samples: 117

Max RPKM: 110.1
Min RPKM: 6.3
Std RPKM: 28.3
Median RPKM: 51
GTEX-13O3Q-0011-R5b-SM-5P9H4 110.1
GTEX-13X6J-0011-R5b-SM-5PNWT 107.8
GTEX-139TT-0011-R5b-SM-5K7W8 106.2
GTEX-145MH-0011-R5a-SM-5P9JT 105.9
GTEX-12WSC-0011-R5b-SM-5CVNS 104.7
GTEX-QVJO-0011-R5A-SM-2S1QM 96.8
GTEX-13VXU-0011-R5a-SM-5O9D7 95.9
GTEX-13G51-0011-R5a-SM-5L3EB 95.2
GTEX-13SLX-0011-R5a-SM-5O9BV 92.2
GTEX-WZTO-0011-R5B-SM-3NMC5 91.9
GTEX-WL46-0011-R5A-SM-3LK6V 91.7
GTEX-1399T-0011-R5b-SM-5IJDK 91.5
GTEX-11NV4-0011-R5a-SM-5NQ88 91.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 90.4
GTEX-1313W-0011-R5b-SM-5L3EP 89.7
GTEX-131YS-0011-R5b-SM-5K7YB 89.6
GTEX-X585-0011-R5A-SM-46MVI 86.6
GTEX-145LS-0011-R5a-SM-5SI65 86.0
GTEX-14ABY-0011-R5b-SM-5SI7B 85.9
GTEX-13X6K-0011-R5b-SM-5PNUE 81.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 79.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 79.7
GTEX-ZUA1-0011-R5b-SM-51MTG 78.9
GTEX-13FXS-0011-R5b-SM-5LZYE 77.9
GTEX-13OVL-0011-R5b-SM-5L3FU 77.3
GTEX-13O3O-0011-R5b-SM-5KM44 75.5
GTEX-T5JC-0011-R5A-SM-32PLK 75.2
GTEX-14BIM-0011-R5b-SM-5S2RM 75.1
GTEX-Z93S-0011-R5b-SM-4RGNI 75.0
GTEX-13OW6-0011-R5a-SM-5O9BK 73.9
GTEX-13NYB-0011-R5a-SM-5MR45 71.9
GTEX-N7MS-0011-R5a-SM-2HMK8 71.4
GTEX-T6MN-0011-R5A-SM-32QPD 70.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 70.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 69.7
GTEX-13S7M-0011-R5b-SM-5P9HS 69.5
GTEX-11OF3-0011-R5a-SM-57WB4 68.1
GTEX-WVLH-0011-R5A-SM-3MJFW 67.2
GTEX-T2IS-0011-R5A-SM-32QP4 66.3
GTEX-11H98-0011-R5b-SM-57WCF 66.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 64.5
GTEX-11GSP-0011-R5a-SM-57WBE 63.8
GTEX-S7SE-0011-R5A-SM-2XCDA 62.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 62.2
GTEX-12WSF-0011-R5a-SM-5HL8K 62.0
GTEX-UTHO-0011-R5A-SM-3GIJD 62.0
GTEX-13OW7-0011-R5b-SM-5O9DM 60.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 59.7
GTEX-12ZZX-0011-R5a-SM-5HL89 58.4
GTEX-TSE9-0011-R5A-SM-3DB7J 57.7
GTEX-WWYW-0011-R5A-SM-3NB3E 57.7
GTEX-R55E-0011-R5A-SM-2TC5N 56.9
GTEX-132Q8-0011-R5a-SM-5IJDM 56.5
GTEX-13FLW-0011-R5a-SM-5LZX6 56.1
GTEX-13FLV-0011-R5a-SM-5LZWT 54.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 54.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 53.5
GTEX-13OVH-0011-R5b-SM-5KM4L 52.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 51.0
GTEX-PVOW-0011-R5A-SM-32PL7 51.0
GTEX-13JUV-0011-R5a-SM-5LZY5 50.0
GTEX-13X6I-0011-R5a-SM-5PNWW 48.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 47.5
GTEX-N7MT-0011-R5a-SM-2I3G6 47.1
GTEX-13NYS-0011-R5a-SM-5MR4D 46.8
GTEX-13OW5-0011-R5b-SM-5L3FR 46.2
GTEX-13CZV-0011-R5a-SM-5K7XA 44.0
GTEX-P44H-0011-R5A-SM-2XCEX 44.0
GTEX-12WSD-0011-R5b-SM-5CVNG 42.6
GTEX-12WSB-0011-R5b-SM-5GU67 41.9
GTEX-RU72-0011-R5A-SM-2TF6U 40.7
GTEX-NL4W-0011-R5a-SM-2I3GD 40.0
GTEX-RVPV-0011-R5A-SM-2TF69 39.7
GTEX-YFC4-0011-R5a-SM-4RGLR 39.4
GTEX-NL3H-0011-R5a-SM-2I3GB 38.8
GTEX-14BIN-0011-R5b-SM-5SI78 38.7
GTEX-XOTO-0011-R5A-SM-4B657 37.2
GTEX-ZXG5-0011-R5b-SM-57WBN 36.3
GTEX-RVPU-0011-R5A-SM-2XCAD 33.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 32.8
GTEX-OHPN-0011-R5A-SM-2I5FF 32.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 32.7
GTEX-ZE7O-0011-R5a-SM-57WBO 30.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 29.8
GTEX-13JVG-0011-R5a-SM-5MR4O 28.6
GTEX-QMR6-0011-R5A-SM-32PKT 28.1
GTEX-12WSH-0011-R5b-SM-5P9F3 27.7
GTEX-12WSA-0011-R5b-SM-5GU5I 27.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 26.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 25.0
GTEX-XMD1-0011-R5A-SM-4AT47 24.1
GTEX-144GO-0011-R5a-SM-5PNUR 22.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 21.7
GTEX-X4XX-0011-R5A-SM-46MWN 21.5
GTEX-13112-0011-R5b-SM-5DUV8 21.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 20.5
GTEX-13CIG-0011-R5b-SM-5L3F2 20.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 18.9
GTEX-OXRN-0011-R5A-SM-2I5EF 18.3
GTEX-144GL-0011-R5b-SM-5PNUJ 16.7
GTEX-YJ89-0011-R5a-SM-4V6GM 16.6
GTEX-ZVT3-0011-R5a-SM-51MSI 16.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 15.9
GTEX-X261-0011-R5A-SM-3NMB4 14.8
GTEX-11WQC-0011-R5a-SM-5BC74 14.3
GTEX-139TS-0011-R5b-SM-5J2MZ 13.9
GTEX-NPJ7-0011-R5a-SM-33HBK 13.1
GTEX-1445S-0011-R5a-SM-5PNUS 12.5
GTEX-ZV68-0011-R5a-SM-4YCDW 12.2
GTEX-13FHP-0011-R5b-SM-5LZY2 11.8
GTEX-1477Z-0011-R5b-SM-5PNUO 9.4
GTEX-13CF2-0011-R5a-SM-5LZWS 8.6
GTEX-13NZA-0011-R5b-SM-5KM4K 7.8
GTEX-11UD1-0011-R5b-SM-5P9FP 7.3
GTEX-139T8-0011-R5b-SM-5J1MO 6.8
GTEX-145MG-0011-R5b-SM-5S2VU 6.6
GTEX-S7PM-0011-R5A-SM-3NM8G 6.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

281.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 281.4
FF:10379-105H1 89 years, female 339.2
FF:10164-103B2 76 years, female 223.5

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.