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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:15.5RPKM

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA046697

 

Antibody HPA061174

 

Antibody CAB025192

 

Glial cells

Low   Low   Medium  

Neuronal cells

High   Medium   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

15.5

GTEx sample id

RPKM

11.515.619.23.827.805101520253035
 
11.515.619.23.827.805101520253035

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 15.5
Samples: 117

Max RPKM: 36.5
Min RPKM: 3.8
Std RPKM: 5.6
Median RPKM: 15.6
GTEX-UTHO-0011-R5A-SM-3GIJD 36.5
GTEX-T6MN-0011-R5A-SM-32QPD 27.8
GTEX-13G51-0011-R5a-SM-5L3EB 26.9
GTEX-X585-0011-R5A-SM-46MVI 26.1
GTEX-131YS-0011-R5b-SM-5K7YB 25.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 23.8
GTEX-13JUV-0011-R5a-SM-5LZY5 23.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 23.6
GTEX-XMD1-0011-R5A-SM-4AT47 23.4
GTEX-P44H-0011-R5A-SM-2XCEX 23.1
GTEX-TSE9-0011-R5A-SM-3DB7J 22.4
GTEX-N7MS-0011-R5a-SM-2HMK8 21.8
GTEX-RU72-0011-R5A-SM-2TF6U 21.6
GTEX-14BIM-0011-R5b-SM-5S2RM 21.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 21.0
GTEX-11OF3-0011-R5a-SM-57WB4 20.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 20.9
GTEX-PVOW-0011-R5A-SM-32PL7 20.9
GTEX-ZUA1-0011-R5b-SM-51MTG 20.9
GTEX-13FXS-0011-R5b-SM-5LZYE 20.6
GTEX-1313W-0011-R5b-SM-5L3EP 20.4
GTEX-QVJO-0011-R5A-SM-2S1QM 20.4
GTEX-12WSC-0011-R5b-SM-5CVNS 20.3
GTEX-13FLW-0011-R5a-SM-5LZX6 20.2
GTEX-N7MT-0011-R5a-SM-2I3G6 20.2
GTEX-11GSP-0011-R5a-SM-57WBE 19.4
GTEX-S7SE-0011-R5A-SM-2XCDA 19.4
GTEX-145MH-0011-R5a-SM-5P9JT 19.3
GTEX-11NV4-0011-R5a-SM-5NQ88 19.2
GTEX-13X6I-0011-R5a-SM-5PNWW 19.2
GTEX-T2IS-0011-R5A-SM-32QP4 19.2
GTEX-145LS-0011-R5a-SM-5SI65 19.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 18.9
GTEX-WL46-0011-R5A-SM-3LK6V 18.6
GTEX-WVLH-0011-R5A-SM-3MJFW 18.6
GTEX-1399T-0011-R5b-SM-5IJDK 18.4
GTEX-13X6J-0011-R5b-SM-5PNWT 18.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 18.3
GTEX-RVPU-0011-R5A-SM-2XCAD 18.1
GTEX-12WSF-0011-R5a-SM-5HL8K 17.9
GTEX-132Q8-0011-R5a-SM-5IJDM 17.9
GTEX-139TT-0011-R5b-SM-5K7W8 17.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 17.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 17.6
GTEX-13X6K-0011-R5b-SM-5PNUE 17.6
GTEX-WZTO-0011-R5B-SM-3NMC5 17.6
GTEX-13SLX-0011-R5a-SM-5O9BV 17.5
GTEX-WWYW-0011-R5A-SM-3NB3E 17.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 17.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 17.1
GTEX-T5JC-0011-R5A-SM-32PLK 17.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 16.8
GTEX-13O3O-0011-R5b-SM-5KM44 16.7
GTEX-13NYS-0011-R5a-SM-5MR4D 16.6
GTEX-13CZV-0011-R5a-SM-5K7XA 16.5
GTEX-13VXU-0011-R5a-SM-5O9D7 16.3
GTEX-14ABY-0011-R5b-SM-5SI7B 16.1
GTEX-13JVG-0011-R5a-SM-5MR4O 15.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 15.6
GTEX-13OVH-0011-R5b-SM-5KM4L 15.6
GTEX-R55E-0011-R5A-SM-2TC5N 15.5
GTEX-11H98-0011-R5b-SM-57WCF 15.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 15.4
GTEX-12WSB-0011-R5b-SM-5GU67 15.2
GTEX-13OW6-0011-R5a-SM-5O9BK 15.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 15.0
GTEX-X4XX-0011-R5A-SM-46MWN 15.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 14.8
GTEX-13OVL-0011-R5b-SM-5L3FU 14.7
GTEX-13FLV-0011-R5a-SM-5LZWT 14.5
GTEX-ZXG5-0011-R5b-SM-57WBN 14.3
GTEX-RVPV-0011-R5A-SM-2TF69 14.2
GTEX-13S7M-0011-R5b-SM-5P9HS 14.1
GTEX-NL4W-0011-R5a-SM-2I3GD 14.0
GTEX-NL3H-0011-R5a-SM-2I3GB 13.9
GTEX-QMR6-0011-R5A-SM-32PKT 13.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 13.7
GTEX-13OW5-0011-R5b-SM-5L3FR 13.6
GTEX-12WSA-0011-R5b-SM-5GU5I 13.2
GTEX-13OW7-0011-R5b-SM-5O9DM 13.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 12.9
GTEX-12WSD-0011-R5b-SM-5CVNG 12.8
GTEX-13CIG-0011-R5b-SM-5L3F2 12.1
GTEX-13NYB-0011-R5a-SM-5MR45 11.8
GTEX-ZE7O-0011-R5a-SM-57WBO 11.8
GTEX-OHPN-0011-R5A-SM-2I5FF 11.7
GTEX-YFC4-0011-R5a-SM-4RGLR 11.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 11.5
GTEX-144GO-0011-R5a-SM-5PNUR 11.0
GTEX-OXRN-0011-R5A-SM-2I5EF 10.7
GTEX-Z93S-0011-R5b-SM-4RGNI 10.4
GTEX-11WQC-0011-R5a-SM-5BC74 10.3
GTEX-14BIN-0011-R5b-SM-5SI78 10.2
GTEX-XOTO-0011-R5A-SM-4B657 10.2
GTEX-12ZZX-0011-R5a-SM-5HL89 10.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 9.7
GTEX-X261-0011-R5A-SM-3NMB4 9.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 9.5
GTEX-YJ89-0011-R5a-SM-4V6GM 9.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 8.4
GTEX-139T8-0011-R5b-SM-5J1MO 8.3
GTEX-139TS-0011-R5b-SM-5J2MZ 8.2
GTEX-NPJ7-0011-R5a-SM-33HBK 8.1
GTEX-13112-0011-R5b-SM-5DUV8 7.8
GTEX-144GL-0011-R5b-SM-5PNUJ 7.8
GTEX-12WSH-0011-R5b-SM-5P9F3 7.7
GTEX-ZV68-0011-R5a-SM-4YCDW 7.4
GTEX-13FHP-0011-R5b-SM-5LZY2 7.0
GTEX-1445S-0011-R5a-SM-5PNUS 7.0
GTEX-ZVT3-0011-R5a-SM-51MSI 6.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 6.7
GTEX-1477Z-0011-R5b-SM-5PNUO 6.7
GTEX-S7PM-0011-R5A-SM-3NM8G 5.6
GTEX-11UD1-0011-R5b-SM-5P9FP 5.5
GTEX-13CF2-0011-R5a-SM-5LZWS 5.3
GTEX-13NZA-0011-R5b-SM-5KM4K 3.8
GTEX-145MG-0011-R5b-SM-5S2VU 3.8
Show all

CAUDATE - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.