Tissue expression of SPG11 - Staining in adipose tissue

SOFT TISSUE - Expression summary

Protein expression

RNA expression

HPA:	17.6	TPM
GTEx:	6.4	RPKM
FANTOM5:	35.3	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Fibroblasts:	Medium
Peripheral nerve:	Low
Chondrocytes:	Medium

Antibody staining	Antibody HPA040412	Antibody HPA040947
Adipocytes	Not detected
Fibroblasts	Medium	Medium
Peripheral nerve	Not detected
Chondrocytes	High

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Chondrocytes:	Medium
Fibroblasts:	Low
Peripheral nerve:	Low

Antibody staining	Antibody HPA040412	Antibody HPA040947
Adipocytes	Not detected	Not detected
Chondrocytes	Not detected	High
Fibroblasts	Low	Medium
Peripheral nerve	Medium	Low

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	17.6

Female, age 80

Sample 1
TPM: 18.1

Cell types%

Adipocytes: 95
Other cell types: 5

Female, age 45

Sample 2
TPM: 14.2

Female, age 57

Sample 3
TPM: 15.5

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

Female, age 74

Sample 4
TPM: 19.2

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

Female, age 59

Sample 5
TPM: 20.8

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	6.4

GTEx sample id

RPKM

Adipose - Subcutaneous

Adipose - Subcutaneous
RPKM: 6.8

Samples: 350

Max RPKM: 11
Min RPKM: 2.8
Std RPKM: 1.1
Median RPKM: 6.7

GTEX-139TU-0226-SM-5J1NM

11.0

GTEX-P4QR-0426-SM-2S1NV

10.6

GTEX-13NYS-0226-SM-5MR49

9.7

GTEX-ZEX8-2326-SM-5S2MN

9.6

GTEX-12WSB-0226-SM-5GCOR

9.5

GTEX-P44H-0326-SM-2XCES

9.5

GTEX-S33H-1126-SM-2XCB6

9.5

GTEX-11P81-2426-SM-5GU65

9.4

Show all

Adipose - Visceral (Omentum)

Adipose - Visceral (Omentum)
RPKM: 5.8

Samples: 227

Max RPKM: 8.8
Min RPKM: 2.5
Std RPKM: 1.3
Median RPKM: 5.8

GTEX-13N11-1826-SM-5IJDS

8.8

GTEX-11DXY-0326-SM-5H12F

8.7

GTEX-14A6H-1026-SM-5SIAZ

8.5

GTEX-Y5V5-0226-SM-5S2N8

8.5

GTEX-YFCO-1126-SM-5S2N9

8.5

GTEX-ZE9C-1326-SM-5S2OW

8.4

GTEX-13NZ9-2026-SM-5KM1U

8.3

GTEX-13X6I-1526-SM-5SIAC

8.3

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	35.3

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 35.3

FF:10010-101C1

65,65,76 years, mixed

35.3