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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.1TPM
GTEx:13.5RPKM
FANTOM5:28.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody CAB004447

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

6.1
overview Male, age 54
Sample 1
TPM: 4.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 7.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 4.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 1.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 4.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 10.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 11.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 6.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 7.0
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 8.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 5.0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 3.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.5

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 13.2
Samples: 149

Max RPKM: 20.5
Min RPKM: 6.7
Std RPKM: 2.5
Median RPKM: 12.9
GTEX-139D8-2926-SM-5IJBM 20.5
GTEX-11WQK-2526-SM-5CVL8 20.2
GTEX-12WSL-1826-SM-5LZW9 19.6
GTEX-13X6I-2726-SM-5Q5ET 19.4
GTEX-1339X-1726-SM-5P9J9 19.0
GTEX-V955-1726-SM-4JBHF 18.4
GTEX-1477Z-2126-SM-5Q5CM 18.1
GTEX-ZYY3-2226-SM-5E45A 18.0
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 13.8
Samples: 196

Max RPKM: 21.7
Min RPKM: 5.7
Std RPKM: 2.4
Median RPKM: 13.4
GTEX-13OVI-2026-SM-5J1MU 21.7
GTEX-11WQK-2126-SM-5EQME 20.2
GTEX-13O3O-2526-SM-5L3DR 19.5
GTEX-13OVJ-1726-SM-5IJDZ 19.5
GTEX-147JS-2526-SM-5S2Q8 19.5
GTEX-1339X-1626-SM-5IJDN 19.2
GTEX-UJMC-1326-SM-4IHLS 18.8
GTEX-ZAB4-2226-SM-5HL97 18.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

28.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 28.2
FF:10014-101C5 62,83,84 years, mixed 28.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.