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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:54.4RPKM
FANTOM5:119.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:Low
 
 

Antibody staining

Antibody HPA002907

 

Antibody HPA005835

 

Glial cells

Medium   High  

Neuronal cells

Medium  
      
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

54.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 54.4
Samples: 117

Max RPKM: 118.7
Min RPKM: 26.8
Std RPKM: 14.9
Median RPKM: 52.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 118.7
GTEX-13JVG-0011-R5a-SM-5MR4O 103.0
GTEX-12WSA-0011-R5b-SM-5GU5I 102.4
GTEX-TSE9-0011-R5A-SM-3DB7J 88.5
GTEX-11H98-0011-R5b-SM-57WCF 85.6
GTEX-139T8-0011-R5b-SM-5J1MO 83.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 79.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 79.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 77.5
GTEX-139TT-0011-R5b-SM-5K7W8 74.2
GTEX-13FLV-0011-R5a-SM-5LZWT 74.2
GTEX-132Q8-0011-R5a-SM-5IJDM 73.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 73.6
GTEX-13CIG-0011-R5b-SM-5L3F2 68.8
GTEX-NPJ7-0011-R5a-SM-33HBK 68.8
GTEX-XMD1-0011-R5A-SM-4AT47 68.8
GTEX-13X6I-0011-R5a-SM-5PNWW 68.6
GTEX-13NYB-0011-R5a-SM-5MR45 66.9
GTEX-13NYS-0011-R5a-SM-5MR4D 66.8
GTEX-X585-0011-R5A-SM-46MVI 66.5
GTEX-12WSB-0011-R5b-SM-5GU67 65.9
GTEX-13OVH-0011-R5b-SM-5KM4L 65.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 63.5
GTEX-13X6K-0011-R5b-SM-5PNUE 62.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 62.1
GTEX-T6MN-0011-R5A-SM-32QPD 61.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 61.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 61.1
GTEX-ZUA1-0011-R5b-SM-51MTG 61.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60.9
GTEX-RVPV-0011-R5A-SM-2TF69 60.7
GTEX-XOTO-0011-R5A-SM-4B657 59.4
GTEX-X261-0011-R5A-SM-3NMB4 59.3
GTEX-13OW5-0011-R5b-SM-5L3FR 59.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 58.3
GTEX-13OW6-0011-R5a-SM-5O9BK 57.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 57.3
GTEX-WWYW-0011-R5A-SM-3NB3E 57.3
GTEX-13CZV-0011-R5a-SM-5K7XA 57.2
GTEX-139TS-0011-R5b-SM-5J2MZ 57.1
GTEX-14BIM-0011-R5b-SM-5S2RM 56.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 56.7
GTEX-N7MS-0011-R5a-SM-2HMK8 56.5
GTEX-13FLW-0011-R5a-SM-5LZX6 55.9
GTEX-11UD1-0011-R5b-SM-5P9FP 55.7
GTEX-12ZZX-0011-R5a-SM-5HL89 55.0
GTEX-X4XX-0011-R5A-SM-46MWN 54.9
GTEX-ZE7O-0011-R5a-SM-57WBO 54.8
GTEX-1399T-0011-R5b-SM-5IJDK 54.7
GTEX-144GO-0011-R5a-SM-5PNUR 54.3
GTEX-R55E-0011-R5A-SM-2TC5N 54.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 53.8
GTEX-11GSP-0011-R5a-SM-57WBE 53.6
GTEX-QMR6-0011-R5A-SM-32PKT 53.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 53.5
GTEX-13G51-0011-R5a-SM-5L3EB 53.2
GTEX-13SLX-0011-R5a-SM-5O9BV 53.2
GTEX-145LS-0011-R5a-SM-5SI65 52.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 52.5
GTEX-12WSC-0011-R5b-SM-5CVNS 51.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 50.6
GTEX-NL3H-0011-R5a-SM-2I3GB 50.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 50.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50.3
GTEX-WZTO-0011-R5B-SM-3NMC5 50.2
GTEX-12WSF-0011-R5a-SM-5HL8K 50.1
GTEX-RU72-0011-R5A-SM-2TF6U 50.0
GTEX-YJ89-0011-R5a-SM-4V6GM 50.0
GTEX-13JUV-0011-R5a-SM-5LZY5 49.7
GTEX-WVLH-0011-R5A-SM-3MJFW 49.3
GTEX-131YS-0011-R5b-SM-5K7YB 49.0
GTEX-P44H-0011-R5A-SM-2XCEX 48.1
GTEX-13O3O-0011-R5b-SM-5KM44 47.9
GTEX-11OF3-0011-R5a-SM-57WB4 47.7
GTEX-OHPN-0011-R5A-SM-2I5FF 47.7
GTEX-RVPU-0011-R5A-SM-2XCAD 47.6
GTEX-QVJO-0011-R5A-SM-2S1QM 47.5
GTEX-YFC4-0011-R5a-SM-4RGLR 47.3
GTEX-ZVT3-0011-R5a-SM-51MSI 47.0
GTEX-13OVL-0011-R5b-SM-5L3FU 46.9
GTEX-1445S-0011-R5a-SM-5PNUS 46.7
GTEX-S7SE-0011-R5A-SM-2XCDA 46.3
GTEX-ZV68-0011-R5a-SM-4YCDW 45.8
GTEX-NL4W-0011-R5a-SM-2I3GD 45.6
GTEX-11WQC-0011-R5a-SM-5BC74 45.3
GTEX-13OW7-0011-R5b-SM-5O9DM 45.2
GTEX-ZXG5-0011-R5b-SM-57WBN 44.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 43.8
GTEX-145MH-0011-R5a-SM-5P9JT 43.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 43.7
GTEX-T5JC-0011-R5A-SM-32PLK 43.6
GTEX-12WSH-0011-R5b-SM-5P9F3 43.4
GTEX-1313W-0011-R5b-SM-5L3EP 43.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 43.1
GTEX-WL46-0011-R5A-SM-3LK6V 43.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 42.5
GTEX-13FHP-0011-R5b-SM-5LZY2 42.0
GTEX-14ABY-0011-R5b-SM-5SI7B 42.0
GTEX-OXRN-0011-R5A-SM-2I5EF 42.0
GTEX-13FXS-0011-R5b-SM-5LZYE 41.5
GTEX-13S7M-0011-R5b-SM-5P9HS 41.2
GTEX-11NV4-0011-R5a-SM-5NQ88 41.1
GTEX-14BIN-0011-R5b-SM-5SI78 40.1
GTEX-12WSD-0011-R5b-SM-5CVNG 39.2
GTEX-13CF2-0011-R5a-SM-5LZWS 38.8
GTEX-UTHO-0011-R5A-SM-3GIJD 38.7
GTEX-Z93S-0011-R5b-SM-4RGNI 38.1
GTEX-13X6J-0011-R5b-SM-5PNWT 37.6
GTEX-PVOW-0011-R5A-SM-32PL7 37.3
GTEX-S7PM-0011-R5A-SM-3NM8G 35.5
GTEX-13112-0011-R5b-SM-5DUV8 35.2
GTEX-1477Z-0011-R5b-SM-5PNUO 34.3
GTEX-144GL-0011-R5b-SM-5PNUJ 34.2
GTEX-13NZA-0011-R5b-SM-5KM4K 29.8
GTEX-145MG-0011-R5b-SM-5S2VU 27.0
GTEX-T2IS-0011-R5A-SM-32QP4 26.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

119.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 119.2
FF:10164-103B2 76 years, female 147.5
FF:10379-105H1 89 years, female 90.9

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