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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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CCNE1
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CCNE1

Gene description

Cyclin E1

Protein class

Cancer-related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

5
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (placenta)
GTEx:Tissue enhanced (testis)
FANTOM5:Tissue enriched (placenta)

Protein evidence

Evidence at protein level

Protein expression

Nuclear and cytoplasmic expression of varying intensity in most tissues. Highest expression in testis and placenta.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Approved based on 3 antibodies.
HPA018169 , CAB000308 , CAB016682
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Placenta

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (placenta)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (placenta)

GENE INFORMATION

Gene name

CCNE1 (HGNC Symbol)

Synonyms

CCNE

Description

Cyclin E1 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. This cyclin forms a complex with and functions as a regulatory subunit of CDK2, whose activity is required for cell cycle G1/S transition. This protein accumulates at the G1-S phase boundary and is degraded as cells progress through S phase. Overexpression of this gene has been observed in many tumors, which results in chromosome instability, and thus may contribute to tumorigenesis. This protein was found to associate with, and be involved in, the phosphorylation of NPAT protein (nuclear protein mapped to the ATM locus), which participates in cell-cycle regulated histone gene expression and plays a critical role in promoting cell-cycle progression in the absence of pRB. Two alternatively spliced transcript variants of this gene, which encode distinct isoforms, have been described. Two additional splice variants were reported but detailed nucleotide sequence information is not yet available. [provided by RefSeq, Jul 2008]

Chromosome

19

Cytoband

q12

Chromosome location (bp)

29811898 - 29824308

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000105173 (version 83.38)

Entrez gene

898

UniProt

P24864 (UniProt - Evidence at protein level)

neXtProt

NX_P24864

Antibodypedia

CCNE1 antibodies

PROTEIN BROWSER

CCNE1-001
CCNE1-002
CCNE1-004
CCNE1-005
CCNE1-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CCNE1-001
ENSP00000262643
ENST00000262643
P24864 [Direct mapping]
G1/S-specific cyclin-E1
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0000083 [regulation of transcription involved in G1/S transition of mitotic cell cycle]
GO:0000278 [mitotic cell cycle]
GO:0000307 [cyclin-dependent protein kinase holoenzyme complex]
GO:0001547 [antral ovarian follicle growth]
GO:0001889 [liver development]
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0006270 [DNA replication initiation]
GO:0006468 [protein phosphorylation]
GO:0010243 [response to organonitrogen compound]
GO:0014070 [response to organic cyclic compound]
GO:0014074 [response to purine-containing compound]
GO:0016055 [Wnt signaling pathway]
GO:0016301 [kinase activity]
GO:0016538 [cyclin-dependent protein serine/threonine kinase regulator activity]
GO:0019901 [protein kinase binding]
GO:0030521 [androgen receptor signaling pathway]
GO:0031100 [organ regeneration]
GO:0031670 [cellular response to nutrient]
GO:0032355 [response to estradiol]
GO:0032403 [protein complex binding]
GO:0032570 [response to progesterone]
GO:0033197 [response to vitamin E]
GO:0034097 [response to cytokine]
GO:0042493 [response to drug]
GO:0045471 [response to ethanol]
GO:0045597 [positive regulation of cell differentiation]
GO:0045859 [regulation of protein kinase activity]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0048545 [response to steroid hormone]
GO:0050681 [androgen receptor binding]
GO:0051301 [cell division]
GO:0051412 [response to corticosterone]
GO:0051597 [response to methylmercury]
GO:0051726 [regulation of cell cycle]
Show all
410 aa
47.1 kDa
No 0
CCNE1-002
ENSP00000410179
ENST00000444983
P24864 [Direct mapping]
G1/S-specific cyclin-E1
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Candidate cancer biomarkers
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0000083 [regulation of transcription involved in G1/S transition of mitotic cell cycle]
GO:0000278 [mitotic cell cycle]
GO:0003713 [transcription coactivator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0030521 [androgen receptor signaling pathway]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0050681 [androgen receptor binding]
GO:0051301 [cell division]
Show all
395 aa
45.1 kDa
No 0
CCNE1-004
ENSP00000459024
ENST00000575243
I3L1Q9 [Direct mapping]
G1/S-specific cyclin-E1
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0005654 [nucleoplasm]
GO:0051726 [regulation of cell cycle]
Show all
216 aa
25.2 kDa
No 0
CCNE1-005
ENSP00000460881
ENST00000576532
I3L413 [Direct mapping]
G1/S-specific cyclin-E1
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0051726 [regulation of cell cycle]
Show all
283 aa
32.4 kDa
No 0
CCNE1-201
ENSP00000350625
ENST00000357943
C9J2U0 [Direct mapping]
Cyclin E variant ex7del; G1/S-specific cyclin-E1
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Amplifications
   COSMIC Somatic Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000082 [G1/S transition of mitotic cell cycle]
GO:0005654 [nucleoplasm]
GO:0051726 [regulation of cell cycle]
Show all
350 aa
39.8 kDa
No 0

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