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GLIS3
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

GLIS3

Gene description

GLIS family zinc finger 3

Protein class

Disease related genes
Predicted intracellular proteins
Predicted secreted proteins
Transcription factors

Predicted localization

Intracellular,Secreted

Number of transcripts

7
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (thyroid gland)
GTEx:Mixed
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General nuclear expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Presumed off target binding observed and disregarded. Pending external verification.

Reliability score

Approved based on 1 antibody.
HPA056426
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Gallbladder

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical
Cerebral cortexHippocampusCaudateCerebellumThyroid glandParathyroid glandAdrenal glandAppendixBone marrowLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleNasopharynxBronchusLungLiverGallbladderPancreasOral mucosaSalivary glandEsophagusStomachDuodenumSmall intestineColonRectumKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastVaginaCervix, uterineEndometriumFallopian tubeOvaryPlacentaAdipose tissueSoft tissueSkinNotdetectedLowMediumHighSCORE

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (thyroid gland)
Cerebral cortexThyroid glandParathyroid glandAdrenal glandAppendixBone marrowLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleLungLiverGallbladderPancreasSalivary glandEsophagusStomachDuodenumSmall intestineColonRectumKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastCervix, uterineEndometriumFallopian tubeOvaryPlacentaAdipose tissueSkin05101520253035TPM
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
HypothalamusPituitary glandCerebral cortexHippocampusCaudateCerebellumThyroid glandAdrenal glandSpleenHeart muscleSkeletal muscleLungLiverPancreasSalivary glandEsophagusStomachSmall intestineColonKidneyUrinary bladderTestisProstateBreastVaginaCervix, uterineEndometriumFallopian tubeOvaryAdipose tissueSkin0246810RPKM
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
Pituitary glandBrainHippocampusCaudateCerebellumThyroid glandAppendixLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleLungLiverGallbladderPancreasSalivary glandEsophagusSmall intestineColonKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastVaginaCervix, uterineEndometriumOvaryPlacentaAdipose tissueRetina050100150200250300Tags Per Million

GENE INFORMATION

Gene name

GLIS3 (HGNC Symbol)

Synonyms

MGC33662, ZNF515

Description

GLIS family zinc finger 3 (HGNC Symbol)

Entrez gene summary

This gene is a member of the GLI-similar zinc finger protein family and encodes a nuclear protein with five C2H2-type zinc finger domains. This protein functions as both a repressor and activator of transcription and is specifically involved in the development of pancreatic beta cells, the thyroid, eye, liver and kidney. Mutations in this gene have been associated with neonatal diabetes and congenital hypothyroidism (NDH). Alternatively spliced variants that encode different protein isoforms have been described but the full-length nature of only two have been determined. [provided by RefSeq, Jul 2008]

Chromosome

9

Cytoband

p24.2

Chromosome location (bp)

3824127 - 4348392

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000107249 (version 83.38)

Entrez gene

169792

UniProt

Q8NEA6 (UniProt - Evidence at transcript level)

neXtProt

NX_Q8NEA6

Antibodypedia

GLIS3 antibodies

PROTEIN BROWSER

GLIS3-003
GLIS3-008
GLIS3-010
GLIS3-012
GLIS3-013
GLIS3-015
GLIS3-017

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

GLIS3-003
ENSP00000325494
ENST00000324333
Q8NEA6 [Direct mapping]
Zinc finger protein GLIS3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
Show all
GO:0000122 [negative regulation of transcription from RNA polymerase II promoter]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005794 [Golgi apparatus]
GO:0006366 [transcription from RNA polymerase II promoter]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0046872 [metal ion binding]
Show all
775 aa
83.6 kDa
Yes 0
GLIS3-008
ENSP00000371398
ENST00000381971
Q8NEA6 [Direct mapping]
Zinc finger protein GLIS3
Show all
Predicted intracellular proteins
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
Show all
GO:0000122 [negative regulation of transcription from RNA polymerase II promoter]
GO:0003677 [DNA binding]
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005794 [Golgi apparatus]
GO:0006366 [transcription from RNA polymerase II promoter]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0046872 [metal ion binding]
Show all
930 aa
99.6 kDa
No 0
GLIS3-010
ENSP00000417794
ENST00000477901
Q1PHJ8 [Direct mapping]
GLIS family zinc finger 3 transcript variant TS2; GLIS family zinc finger 3 transcript variant TS3; GLIS family zinc finger 3 transcript variant TS4; GLIS family zinc finger 3 transcript variant TS5; Zinc finger protein GLIS3
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Predicted intracellular proteins
Show all
244 aa
25.5 kDa
No 0
GLIS3-012
ENSP00000418005
ENST00000478844
Q1PHJ2 [Direct mapping]
GLIS family zinc finger 3 transcript variant TS10; GLIS family zinc finger 3 transcript variant TS11; GLIS family zinc finger 3 transcript variant TS7; GLIS family zinc finger 3 transcript variant TS8; GLIS family zinc finger 3 transcript variant TS9; Zinc finger protein GLIS3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Show all
89 aa
9.5 kDa
Yes 0
GLIS3-013
ENSP00000417883
ENST00000481827
Q1PHJ8 [Direct mapping]
GLIS family zinc finger 3 transcript variant TS2; GLIS family zinc finger 3 transcript variant TS3; GLIS family zinc finger 3 transcript variant TS4; GLIS family zinc finger 3 transcript variant TS5; Zinc finger protein GLIS3
Show all
Predicted intracellular proteins
Show all
244 aa
25.5 kDa
No 0
GLIS3-015
ENSP00000418995
ENST00000478315
Q1PHJ2 [Direct mapping]
GLIS family zinc finger 3 transcript variant TS10; GLIS family zinc finger 3 transcript variant TS11; GLIS family zinc finger 3 transcript variant TS7; GLIS family zinc finger 3 transcript variant TS8; GLIS family zinc finger 3 transcript variant TS9; Zinc finger protein GLIS3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Show all
89 aa
9.5 kDa
Yes 0
GLIS3-017
ENSP00000418671
ENST00000462164
Q1PHJ2 [Direct mapping]
GLIS family zinc finger 3 transcript variant TS10; GLIS family zinc finger 3 transcript variant TS11; GLIS family zinc finger 3 transcript variant TS7; GLIS family zinc finger 3 transcript variant TS8; GLIS family zinc finger 3 transcript variant TS9; Zinc finger protein GLIS3
Show all
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Show all
89 aa
9.5 kDa
Yes 0

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