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SH3GL2
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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:23.1RPKM
FANTOM5:97.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA026685

 

Antibody HPA063573

 

Antibody CAB010056

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Low   Medium   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

23.1

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 23.1
Samples: 117

Max RPKM: 64.1
Min RPKM: 1.3
Std RPKM: 14.3
Median RPKM: 24.3
GTEX-T2IS-0011-R5A-SM-32QP4 64.1
GTEX-131YS-0011-R5b-SM-5K7YB 57.3
GTEX-12WSC-0011-R5b-SM-5CVNS 48.4
GTEX-13G51-0011-R5a-SM-5L3EB 45.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 45.4
GTEX-QVJO-0011-R5A-SM-2S1QM 45.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 44.3
GTEX-UTHO-0011-R5A-SM-3GIJD 44.1
GTEX-139TT-0011-R5b-SM-5K7W8 44.0
GTEX-1399T-0011-R5b-SM-5IJDK 42.8
GTEX-11OF3-0011-R5a-SM-57WB4 42.0
GTEX-14BIM-0011-R5b-SM-5S2RM 41.5
GTEX-145MH-0011-R5a-SM-5P9JT 41.3
GTEX-P44H-0011-R5A-SM-2XCEX 41.1
GTEX-1313W-0011-R5b-SM-5L3EP 41.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 40.8
GTEX-WWYW-0011-R5A-SM-3NB3E 40.8
GTEX-PVOW-0011-R5A-SM-32PL7 39.9
GTEX-12WSF-0011-R5a-SM-5HL8K 37.7
GTEX-X585-0011-R5A-SM-46MVI 36.9
GTEX-14ABY-0011-R5b-SM-5SI7B 36.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 36.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 36.4
GTEX-S7SE-0011-R5A-SM-2XCDA 35.8
GTEX-WL46-0011-R5A-SM-3LK6V 35.4
GTEX-N7MT-0011-R5a-SM-2I3G6 35.3
GTEX-145LS-0011-R5a-SM-5SI65 34.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 34.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 34.6
GTEX-132Q8-0011-R5a-SM-5IJDM 34.5
GTEX-13X6K-0011-R5b-SM-5PNUE 34.1
GTEX-13SLX-0011-R5a-SM-5O9BV 33.8
GTEX-ZUA1-0011-R5b-SM-51MTG 32.6
GTEX-Z93S-0011-R5b-SM-4RGNI 32.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 32.2
GTEX-13X6J-0011-R5b-SM-5PNWT 32.0
GTEX-RU72-0011-R5A-SM-2TF6U 31.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 31.8
GTEX-T5JC-0011-R5A-SM-32PLK 31.6
GTEX-13VXU-0011-R5a-SM-5O9D7 31.5
GTEX-T6MN-0011-R5A-SM-32QPD 31.1
GTEX-11GSP-0011-R5a-SM-57WBE 31.0
GTEX-13O3O-0011-R5b-SM-5KM44 30.5
GTEX-13S7M-0011-R5b-SM-5P9HS 30.5
GTEX-R55E-0011-R5A-SM-2TC5N 30.5
GTEX-WZTO-0011-R5B-SM-3NMC5 30.5
GTEX-N7MS-0011-R5a-SM-2HMK8 30.3
GTEX-WVLH-0011-R5A-SM-3MJFW 30.2
GTEX-11H98-0011-R5b-SM-57WCF 28.3
GTEX-TSE9-0011-R5A-SM-3DB7J 27.8
GTEX-13X6I-0011-R5a-SM-5PNWW 26.9
GTEX-13JUV-0011-R5a-SM-5LZY5 26.7
GTEX-13NYS-0011-R5a-SM-5MR4D 25.8
GTEX-13CZV-0011-R5a-SM-5K7XA 25.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 24.8
GTEX-13FXS-0011-R5b-SM-5LZYE 24.7
GTEX-11NV4-0011-R5a-SM-5NQ88 24.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 24.3
GTEX-13FLW-0011-R5a-SM-5LZX6 24.3
GTEX-13OW6-0011-R5a-SM-5O9BK 23.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.2
GTEX-13OVL-0011-R5b-SM-5L3FU 22.1
GTEX-13OW5-0011-R5b-SM-5L3FR 21.7
GTEX-RVPU-0011-R5A-SM-2XCAD 21.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 21.7
GTEX-12WSD-0011-R5b-SM-5CVNG 20.8
GTEX-13OW7-0011-R5b-SM-5O9DM 19.6
GTEX-ZE7O-0011-R5a-SM-57WBO 18.9
GTEX-NL4W-0011-R5a-SM-2I3GD 16.8
GTEX-XMD1-0011-R5A-SM-4AT47 16.6
GTEX-13OVH-0011-R5b-SM-5KM4L 15.6
GTEX-NL3H-0011-R5a-SM-2I3GB 15.3
GTEX-12WSB-0011-R5b-SM-5GU67 15.2
GTEX-RVPV-0011-R5A-SM-2TF69 14.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 13.7
GTEX-13CIG-0011-R5b-SM-5L3F2 13.6
GTEX-13FLV-0011-R5a-SM-5LZWT 12.9
GTEX-ZXG5-0011-R5b-SM-57WBN 12.8
GTEX-14BIN-0011-R5b-SM-5SI78 12.4
GTEX-OHPN-0011-R5A-SM-2I5FF 12.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 12.3
GTEX-13NYB-0011-R5a-SM-5MR45 12.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 12.2
GTEX-12ZZX-0011-R5a-SM-5HL89 12.1
GTEX-QMR6-0011-R5A-SM-32PKT 12.0
GTEX-YFC4-0011-R5a-SM-4RGLR 11.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 11.1
GTEX-OXRN-0011-R5A-SM-2I5EF 10.9
GTEX-XOTO-0011-R5A-SM-4B657 10.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 9.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 8.9
GTEX-12WSH-0011-R5b-SM-5P9F3 8.8
GTEX-13JVG-0011-R5a-SM-5MR4O 8.6
GTEX-144GO-0011-R5a-SM-5PNUR 8.4
GTEX-YJ89-0011-R5a-SM-4V6GM 8.3
GTEX-X4XX-0011-R5A-SM-46MWN 7.0
GTEX-11WQC-0011-R5a-SM-5BC74 6.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 6.4
GTEX-ZV68-0011-R5a-SM-4YCDW 5.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 5.7
GTEX-ZVT3-0011-R5a-SM-51MSI 5.6
GTEX-139TS-0011-R5b-SM-5J2MZ 5.3
GTEX-12WSA-0011-R5b-SM-5GU5I 5.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 5.0
GTEX-NPJ7-0011-R5a-SM-33HBK 4.9
GTEX-X261-0011-R5A-SM-3NMB4 4.9
GTEX-13112-0011-R5b-SM-5DUV8 3.9
GTEX-144GL-0011-R5b-SM-5PNUJ 3.8
GTEX-1477Z-0011-R5b-SM-5PNUO 3.8
GTEX-13FHP-0011-R5b-SM-5LZY2 3.0
GTEX-1445S-0011-R5a-SM-5PNUS 2.9
GTEX-S7PM-0011-R5A-SM-3NM8G 2.5
GTEX-13CF2-0011-R5a-SM-5LZWS 2.1
GTEX-11UD1-0011-R5b-SM-5P9FP 2.0
GTEX-145MG-0011-R5b-SM-5S2VU 1.8
GTEX-139T8-0011-R5b-SM-5J1MO 1.6
GTEX-13NZA-0011-R5b-SM-5KM4K 1.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

97.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 97.2
FF:10379-105H1 89 years, female 123.7
FF:10164-103B2 76 years, female 70.6

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