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Term
Gene name

Class

Subclass

Chromosome

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Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

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Score

Score

Antibodies

Column

 
 
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RNF43
  • TISSUE

  • CELL

  • CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

CANCER ATLAS

Gene description

Ring finger protein 43

Protein class

Cancer-related genes, Predicted membrane proteins

Protein evidence

Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY

HPA008079

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Malignant cells showed strong nuclear immunoreactivity.

GENE INFORMATION

Gene name

RNF43 (HGNC Symbol)

Synonyms

DKFZp781H0392, FLJ20315, URCC

Description

Ring finger protein 43 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a RING-type E3 ubiquitin ligase and is predicted to contain a transmembrane domain, a protease-associated domain, an ectodomain, and a cytoplasmic RING domain. This protein is thought to negatively regulate Wnt signaling, and expression of this gene results in an increase in ubiquitination of frizzled receptors, an alteration in their subcellular distribution, resulting in reduced surface levels of these receptors. Mutations in this gene have been reported in multiple tumor cells, including colorectal and endometrial cancers. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2015]

Chromosome

17

Cytoband

q22

Chromosome location (bp)

58352500 - 58417595

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000108375 (version 83.38)

Entrez gene

54894

UniProt

Q68DV7 (UniProt - Evidence at protein level)

neXtProt

NX_Q68DV7

Antibodypedia

RNF43 antibodies

PROTEIN BROWSER

RNF43-001
RNF43-002
RNF43-003
RNF43-004
RNF43-005
RNF43-006

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

RNF43-001
ENSP00000462764
ENST00000577716
Q68DV7 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016874 [ligase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0072089 [stem cell proliferation]
Show all
783 aa
85.7 kDa
Yes 1
RNF43-002
ENSP00000463069
ENST00000584437
Q68DV7 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016874 [ligase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0072089 [stem cell proliferation]
Show all
783 aa
85.7 kDa
Yes 1
RNF43-003
ENSP00000385328
ENST00000407977
Q68DV7 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016874 [ligase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0072089 [stem cell proliferation]
Show all
783 aa
85.7 kDa
Yes 1
RNF43-004
ENSP00000462447
ENST00000581868
J3KSE3 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0005515 [protein binding]
GO:0008270 [zinc ion binding]
GO:0016021 [integral component of membrane]
Show all
742 aa
81.4 kDa
No 1
RNF43-005
ENSP00000462502
ENST00000583753
Q68DV7 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016874 [ligase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0072089 [stem cell proliferation]
Show all
742 aa
81.2 kDa
Yes 1
RNF43-006
ENSP00000463716
ENST00000577625
Q68DV7 [Direct mapping]
E3 ubiquitin-protein ligase RNF43
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Frameshift Mutations
Show all
GO:0004842 [ubiquitin-protein transferase activity]
GO:0005109 [frizzled binding]
GO:0005515 [protein binding]
GO:0005635 [nuclear envelope]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0008270 [zinc ion binding]
GO:0016055 [Wnt signaling pathway]
GO:0016567 [protein ubiquitination]
GO:0016874 [ligase activity]
GO:0030178 [negative regulation of Wnt signaling pathway]
GO:0038018 [Wnt receptor catabolic process]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0072089 [stem cell proliferation]
Show all
656 aa
72.1 kDa
No 1

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The Human Protein Atlas project is funded
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