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UTP6

GENERAL INFORMATION

Gene name

 UTP6

Gene description

 UTP6, small subunit (SSU) processome component, homolog (yeast)

Protein class

 Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 3
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 General nucleolar expression.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly consistent with RNA expression data. Presumed off target binding observed and disregarded.

Reliability score

 Supported based on 1 antibody.
HPA025936
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 UTP6 (HGNC Symbol)

Synonyms

 C17orf40, HCA66

Description

 UTP6, small subunit (SSU) processome component, homolog (yeast) (HGNC Symbol)

Entrez gene summary

Chromosome

 17

Cytoband

 q11.2

Chromosome location (bp)

 31860899 - 31901765

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000108651 (version 83.38)

Entrez gene

 55813

UniProt

 Q9NYH9 (UniProt - Evidence at transcript level)

neXtProt

 NX_Q9NYH9

Antibodypedia

 UTP6 antibodies

PROTEIN BROWSER
UTP6-001
UTP6-007
UTP6-008

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
UTP6-001
ENSP00000261708
ENST00000261708
Q9NYH9 [Direct mapping]
U3 small nucleolar RNA-associated protein 6 homolog
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Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000462 [maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)]
GO:0005622 [intracellular]
GO:0005730 [nucleolus]
GO:0006396 [RNA processing]
GO:0030515 [snoRNA binding]
GO:0032040 [small-subunit processome]
GO:0034388 [Pwp2p-containing subcomplex of 90S preribosome]
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 597 aa
70.2 kDa 		No 0
UTP6-007
ENSP00000462135
ENST00000581012
J3KRR8 [Direct mapping]
U3 small nucleolar RNA-associated protein 6 homolog
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Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000462 [maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)]
GO:0030515 [snoRNA binding]
GO:0032040 [small-subunit processome]
GO:0034388 [Pwp2p-containing subcomplex of 90S preribosome]
Show all
 61 aa
6.9 kDa 		No 0
UTP6-008
ENSP00000464599
ENST00000579459
J3QSA7 [Direct mapping]
U3 small nucleolar RNA-associated protein 6 homolog
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000462 [maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)]
GO:0030515 [snoRNA binding]
GO:0032040 [small-subunit processome]
GO:0034388 [Pwp2p-containing subcomplex of 90S preribosome]
Show all
 29 aa
3.5 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.