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Gene name

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Validation

Method

Validation

Method

Validation

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Expression

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Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

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PTPN6
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
  NCI-CPTC
 

Product name

HPA001466   sc-7289   CPTC-PTPN6-2  

Host species

Rabbit   Mouse   Mouse  

Clonality

pAb   mAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G   Protein A/G  

Other gene match

     

Released in version

4   2   14  

References

1      

VALIDATION SUMMARY

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 
Immunocytochemistry

Supported      
Immunohistochemistry


Validated
 

Validated
  Supported  
Western blot

Supported   Uncertain   Supported  
Protein array

Supported      

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Standard validation

Supported      

     

Figure description

Immunofluorescent staining of human cell line A-431 shows localization to nucleus.      

Antibody dilution

1:50      

Literature conformity

The subcellular location is supported by literature.      

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
   

Cell line02,0004,0006,0008,00010,000Protein expression
 
SH-SY5YU-138 MGU-251 MGU-87 MGA-431HaCaTSK-MEL-30WM-115HELHL-60HMC-1K-562NB-4THP-1U-937DaudiHDLM-2Karpas-707MOLT-4REHRPMI-8226U-266/70U-266/84U-698A549SCLC-21HCACO-2CAPAN-2Hep G2AN3-CAEFO-21HeLaMCF7SiHaSK-BR-3HEK 293NTERA-2PC-3RT4RH-30U-2 OSU-2197TIMEBEWO02,0004,0006,0008,00010,000Protein expressionBrainSkinMyeloidLymphoidLungAbdominalBreast, female reproductive systemRenal, urinary, male reproductive systemSarcomaEndothelialMiscellaneous

Cell line0100200300400500600RNA expression
 
SH-SY5YU-138 MGU-251 MGU-87 MGA-431HaCaTSK-MEL-30WM-115HELHL-60HMC-1K-562NB-4THP-1U-937DaudiHDLM-2Karpas-707MOLT-4REHRPMI-8226U-266/70U-266/84U-698A549SCLC-21HCACO-2CAPAN-2Hep G2AN3-CAEFO-21HeLaMCF7SiHaSK-BR-3HEK 293NTERA-2PC-3RT4RH-30U-2 OSU-2197TIMEBEWO0100200300400500600RNA expressionBrainSkinMyeloidLymphoidLungAbdominalBreast, female reproductive systemRenal, urinary, male reproductive systemSarcomaEndothelialMiscellaneous

 
Cell line0100200300400Protein expression
 
SH-SY5YU-138 MGU-251 MGU-87 MGA-431HaCaTSK-MEL-30WM-115HELHL-60HMC-1K-562NB-4THP-1U-937DaudiHDLM-2Karpas-707MOLT-4REHRPMI-8226U-266/70U-266/84U-698A549SCLC-21HCACO-2CAPAN-2Hep G2AN3-CAEFO-21HeLaMCF7SiHaSK-BR-3HEK 293NTERA-2PC-3RT4RH-30U-2 OSU-2197TIMEBEWO0100200300400Protein expressionBrainSkinMyeloidLymphoidLungAbdominalBreast, female reproductive systemRenal, urinary, male reproductive systemSarcomaEndothelialMiscellaneous

Cell line0100200300400500600RNA expression
 
SH-SY5YU-138 MGU-251 MGU-87 MGA-431HaCaTSK-MEL-30WM-115HELHL-60HMC-1K-562NB-4THP-1U-937DaudiHDLM-2Karpas-707MOLT-4REHRPMI-8226U-266/70U-266/84U-698A549SCLC-21HCACO-2CAPAN-2Hep G2AN3-CAEFO-21HeLaMCF7SiHaSK-BR-3HEK 293NTERA-2PC-3RT4RH-30U-2 OSU-2197TIMEBEWO0100200300400500600RNA expressionBrainSkinMyeloidLymphoidLungAbdominalBreast, female reproductive systemRenal, urinary, male reproductive systemSarcomaEndothelialMiscellaneous

   

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.    
 

Formal validation: Orthogonal

Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
 
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
   

N/ATissueNotdetectedLowMediumHighProtein expression
 
N/Acerebral cortexadrenal glandparathyroid glandthyroid glandappendixbone marrowlymph nodespleentonsilheart muscleskeletal musclesmooth musclelunggallbladderliverpancreascolonduodenumesophagusrectumsalivary glandsmall intestinestomachkidneyurinary bladderepididymisprostateseminal vesicletestisbreastcervix, uterineendometriumfallopian tubeovaryplacentaadipose tissueskinNot detectedLowMediumHighProtein expressionBrainEndocrine tissuesBone marrow & immune systemMuscle tissuesRespiratory systemLiver & gallbladderPancreasGastrointestinal tractKidney & urinary bladderMale reproductive systemBreast and female reproductive systemAdipose & soft tissueSkin

Tissue050100150200RNA expression
 
cerebral cortexadrenal glandparathyroid glandthyroid glandappendixbone marrowlymph nodespleentonsilheart muscleskeletal musclesmooth musclelunggallbladderliverpancreascolonduodenumesophagusrectumsalivary glandsmall intestinestomachkidneyurinary bladderepididymisprostateseminal vesicletestisbreastcervix, uterineendometriumfallopian tubeovaryplacentaadipose tissueskin050100150200RNA expressionBrainEndocrine tissuesBone marrow & immune systemMuscle tissuesRespiratory systemLiver & gallbladderPancreasGastrointestinal tractKidney & urinary bladderMale reproductive systemBreast and female reproductive systemAdipose & soft tissueSkin

 
TissueNotdetectedLowMediumHighProtein expression
 
cerebral cortexadrenal glandparathyroid glandthyroid glandappendixbone marrowlymph nodespleentonsilheart muscleskeletal musclesmooth musclelunggallbladderliverpancreascolonduodenumesophagusrectumsalivary glandsmall intestinestomachkidneyurinary bladderepididymisprostateseminal vesicletestisbreastcervix, uterineendometriumfallopian tubeovaryplacentaadipose tissueskinNot detectedLowMediumHighProtein expressionBrainEndocrine tissuesBone marrow & immune systemMuscle tissuesRespiratory systemLiver & gallbladderPancreasGastrointestinal tractKidney & urinary bladderMale reproductive systemBreast and female reproductive systemAdipose & soft tissueSkin

Tissue050100150200RNA expression
 
cerebral cortexadrenal glandparathyroid glandthyroid glandappendixbone marrowlymph nodespleentonsilheart muscleskeletal musclesmooth musclelunggallbladderliverpancreascolonduodenumesophagusrectumsalivary glandsmall intestinestomachkidneyurinary bladderepididymisprostateseminal vesicletestisbreastcervix, uterineendometriumfallopian tubeovaryplacentaadipose tissueskin050100150200RNA expressionBrainEndocrine tissuesBone marrow & immune systemMuscle tissuesRespiratory systemLiver & gallbladderPancreasGastrointestinal tractKidney & urinary bladderMale reproductive systemBreast and female reproductive systemAdipose & soft tissueSkin

   

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 36 tissues.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.    
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human lymph node shows strong cytoplasmic positivity in reaction center cells and lymphoid cells outside reaction centra.   Immunohistochemical staining of human lymph node shows strong cytoplasmic positivity in lymphoid cells outside reaction centra.   Immunohistochemical staining of human tonsil shows strong positivity in non-germinal cells.  

Expression

RNA: detected in 36 tissues
Protein: detected in 51 cell types
  RNA: detected in 36 tissues
Protein: detected in 9 cell types
  RNA: detected in 36 tissues
Protein: detected in 45 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:250   1:40   1:3500  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 206, 113, 82, 49, 32, 26, 17.8
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 229, 112, 83.5, 47.9, 32.3, 26.5, 17.2
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

67.7, 67.6   70.1, 67.7, 67.6, 18.5, 17.1, 16.1, 14.6   70.1, 67.7, 67.6, 18.5, 17.1, 16.1, 14.6  

Antibody dilution

1:250   1:500   1:500  

PROTEIN ARRAY

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
     

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.      

Antibody dilution

1:3000      

ANTIGEN INFORMATION

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

Antigen

Recombinant protein fragment   Synthetic peptide   Recombinant protein  

Length (aa)

149      

Antigen sequence

HAGPIIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQ
RSGMVQTEAQYKFIYVAIAQFIETTKKKLEVLQSQKGQESEYGNITYPPA
MKNAHAKASRTSSKHKEDVYENLHTKNKREEKVKKQRSADKEKSKGSLK
     

Matching transcripts

PTPN6-001 - ENSP00000382376 [100%]
PTPN6-008 - ENSP00000326010 [100%]
     

Other gene match

     
ANTIGEN VIEW
PTPN6-001
PTPN6-008

RELEVANT PUBLICATIONS

 
 

Antibody HPA001466

 

Antibody CAB004572

 

Antibody CAB072845

 

1.

Constitutive activation of STAT3 in Sézary syndrome is independent of SHP-1
McKenzie RC et al
Leukemia 2012;26(2):323-31
     
 

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The Human Protein Atlas project is funded
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