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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:49.0RPKM
FANTOM5:367.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA004105

 

Antibody CAB022161

 

Glial cells

Not detected   Low  

Neuronal cells

Low   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

49.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 49.0
Samples: 117

Max RPKM: 150.5
Min RPKM: 4.2
Std RPKM: 28.2
Median RPKM: 50.4
GTEX-T2IS-0011-R5A-SM-32QP4 150.5
GTEX-131YS-0011-R5b-SM-5K7YB 106.3
GTEX-P44H-0011-R5A-SM-2XCEX 105.0
GTEX-13G51-0011-R5a-SM-5L3EB 93.2
GTEX-1399T-0011-R5b-SM-5IJDK 92.1
GTEX-PVOW-0011-R5A-SM-32PL7 90.2
GTEX-12WSC-0011-R5b-SM-5CVNS 88.8
GTEX-1313W-0011-R5b-SM-5L3EP 88.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 88.5
GTEX-145LS-0011-R5a-SM-5SI65 87.7
GTEX-145MH-0011-R5a-SM-5P9JT 86.0
GTEX-13X6J-0011-R5b-SM-5PNWT 84.4
GTEX-13SLX-0011-R5a-SM-5O9BV 80.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 80.6
GTEX-13VXU-0011-R5a-SM-5O9D7 79.1
GTEX-14ABY-0011-R5b-SM-5SI7B 79.1
GTEX-QVJO-0011-R5A-SM-2S1QM 78.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 77.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 77.5
GTEX-UTHO-0011-R5A-SM-3GIJD 76.9
GTEX-WVLH-0011-R5A-SM-3MJFW 76.2
GTEX-14BIM-0011-R5b-SM-5S2RM 75.9
GTEX-11OF3-0011-R5a-SM-57WB4 74.9
GTEX-WL46-0011-R5A-SM-3LK6V 74.8
GTEX-11GSP-0011-R5a-SM-57WBE 74.7
GTEX-13O3O-0011-R5b-SM-5KM44 73.6
GTEX-Z93S-0011-R5b-SM-4RGNI 72.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 72.2
GTEX-N7MS-0011-R5a-SM-2HMK8 72.0
GTEX-T6MN-0011-R5A-SM-32QPD 71.5
GTEX-S7SE-0011-R5A-SM-2XCDA 71.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 71.0
GTEX-WZTO-0011-R5B-SM-3NMC5 69.5
GTEX-12WSF-0011-R5a-SM-5HL8K 69.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 68.6
GTEX-WWYW-0011-R5A-SM-3NB3E 68.6
GTEX-ZUA1-0011-R5b-SM-51MTG 66.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 66.2
GTEX-X585-0011-R5A-SM-46MVI 65.8
GTEX-13FLW-0011-R5a-SM-5LZX6 64.7
GTEX-N7MT-0011-R5a-SM-2I3G6 64.3
GTEX-13FXS-0011-R5b-SM-5LZYE 64.0
GTEX-T5JC-0011-R5A-SM-32PLK 62.6
GTEX-13OVL-0011-R5b-SM-5L3FU 61.9
GTEX-11NV4-0011-R5a-SM-5NQ88 61.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60.6
GTEX-13X6K-0011-R5b-SM-5PNUE 58.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 56.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 56.9
GTEX-11H98-0011-R5b-SM-57WCF 56.5
GTEX-RU72-0011-R5A-SM-2TF6U 56.4
GTEX-R55E-0011-R5A-SM-2TC5N 55.5
GTEX-TSE9-0011-R5A-SM-3DB7J 54.8
GTEX-139TT-0011-R5b-SM-5K7W8 52.6
GTEX-13JUV-0011-R5a-SM-5LZY5 52.5
GTEX-RVPU-0011-R5A-SM-2XCAD 52.1
GTEX-13OW7-0011-R5b-SM-5O9DM 51.6
GTEX-13S7M-0011-R5b-SM-5P9HS 51.6
GTEX-12WSD-0011-R5b-SM-5CVNG 50.4
GTEX-13OW6-0011-R5a-SM-5O9BK 49.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 49.0
GTEX-132Q8-0011-R5a-SM-5IJDM 46.6
GTEX-13CZV-0011-R5a-SM-5K7XA 45.6
GTEX-13X6I-0011-R5a-SM-5PNWW 45.6
GTEX-ZE7O-0011-R5a-SM-57WBO 45.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 44.9
GTEX-13OW5-0011-R5b-SM-5L3FR 40.6
GTEX-RVPV-0011-R5A-SM-2TF69 40.3
GTEX-13NYB-0011-R5a-SM-5MR45 38.1
GTEX-OHPN-0011-R5A-SM-2I5FF 37.5
GTEX-NL4W-0011-R5a-SM-2I3GD 37.0
GTEX-13FLV-0011-R5a-SM-5LZWT 36.5
GTEX-YFC4-0011-R5a-SM-4RGLR 36.5
GTEX-12WSB-0011-R5b-SM-5GU67 36.4
GTEX-14BIN-0011-R5b-SM-5SI78 36.3
GTEX-QMR6-0011-R5A-SM-32PKT 35.2
GTEX-13OVH-0011-R5b-SM-5KM4L 33.6
GTEX-XOTO-0011-R5A-SM-4B657 33.6
GTEX-ZXG5-0011-R5b-SM-57WBN 32.8
GTEX-13NYS-0011-R5a-SM-5MR4D 32.2
GTEX-NL3H-0011-R5a-SM-2I3GB 28.7
GTEX-12ZZX-0011-R5a-SM-5HL89 27.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 26.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 26.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 26.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 26.1
GTEX-OXRN-0011-R5A-SM-2I5EF 25.9
GTEX-XMD1-0011-R5A-SM-4AT47 25.5
GTEX-12WSA-0011-R5b-SM-5GU5I 23.7
GTEX-YJ89-0011-R5a-SM-4V6GM 22.7
GTEX-X4XX-0011-R5A-SM-46MWN 21.7
GTEX-13JVG-0011-R5a-SM-5MR4O 21.6
GTEX-144GO-0011-R5a-SM-5PNUR 20.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 20.9
GTEX-11WQC-0011-R5a-SM-5BC74 20.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 19.3
GTEX-13CIG-0011-R5b-SM-5L3F2 18.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 16.9
GTEX-ZVT3-0011-R5a-SM-51MSI 16.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 15.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 14.5
GTEX-144GL-0011-R5b-SM-5PNUJ 14.4
GTEX-ZV68-0011-R5a-SM-4YCDW 13.6
GTEX-X261-0011-R5A-SM-3NMB4 12.7
GTEX-12WSH-0011-R5b-SM-5P9F3 12.4
GTEX-13112-0011-R5b-SM-5DUV8 10.6
GTEX-139TS-0011-R5b-SM-5J2MZ 10.3
GTEX-NPJ7-0011-R5a-SM-33HBK 9.7
GTEX-13FHP-0011-R5b-SM-5LZY2 9.5
GTEX-1477Z-0011-R5b-SM-5PNUO 9.2
GTEX-1445S-0011-R5a-SM-5PNUS 8.8
GTEX-S7PM-0011-R5A-SM-3NM8G 7.2
GTEX-11UD1-0011-R5b-SM-5P9FP 6.1
GTEX-13CF2-0011-R5a-SM-5LZWS 5.8
GTEX-139T8-0011-R5b-SM-5J1MO 4.9
GTEX-145MG-0011-R5b-SM-5S2VU 4.4
GTEX-13NZA-0011-R5b-SM-5KM4K 4.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

367.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 367.0
FF:10379-105H1 89 years, female 473.0
FF:10164-103B2 76 years, female 261.0

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