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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:139.4TPM
GTEx:52.6RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Medium
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA004105

 

Antibody CAB022161

 

Endothelial cells

Low   Not detected  

Glial cells

Low   Medium  

Neuronal cells

High   High  

Neuropil

Medium   Medium  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

139.4

N/A Male, age 5
Sample 1
TPM: 174.0
overview Female, age 40
Sample 2
TPM: 102.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 141.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

52.6

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 40.9
Samples: 114

Max RPKM: 82.3
Min RPKM: 10
Std RPKM: 15.3
Median RPKM: 40.7
GTEX-13NYC-2826-SM-5K7WR 82.3
GTEX-PVOW-2526-SM-2XCF7 79.2
GTEX-11NUK-2926-SM-5A5MD 69.5
GTEX-X585-3026-SM-46MWF 66.2
GTEX-11DXY-3226-SM-5GIDE 65.6
GTEX-14BMV-3026-SM-5S2PQ 65.0
GTEX-UTHO-3026-SM-3GAFB 64.7
GTEX-131YS-3126-SM-5KLYT 64.1
GTEX-TSE9-3026-SM-3DB76 63.9
GTEX-T5JC-2426-SM-3NMDB 62.6
GTEX-QMR6-1426-SM-32PLA 62.2
GTEX-132Q8-3026-SM-5PNVG 61.9
GTEX-T2IS-3026-SM-32QPM 60.6
GTEX-11PRG-2926-SM-5987A 59.6
GTEX-11ZUS-2926-SM-5FQSL 59.6
GTEX-ZAK1-3026-SM-5S2MJ 59.4
GTEX-WZTO-2926-SM-3NM9I 57.9
GTEX-12ZZX-2926-SM-5GCOQ 56.8
GTEX-145MH-3026-SM-5Q5DZ 56.7
GTEX-WVLH-3026-SM-3MJG9 55.8
GTEX-117XS-3026-SM-5N9CA 55.3
GTEX-RNOR-2326-SM-2TF4I 54.4
GTEX-Z93S-2926-SM-57WB9 54.3
GTEX-WHSE-3026-SM-3P5ZH 54.2
GTEX-145LS-3126-SM-5Q5BY 53.8
GTEX-YFC4-3126-SM-5PNV6 53.8
GTEX-11O72-2926-SM-5BC4V 53.2
GTEX-WL46-2926-SM-3LK82 53.2
GTEX-WWYW-3126-SM-3NB39 52.4
GTEX-X4XX-3026-SM-3NMB2 52.3
GTEX-13FXS-3126-SM-5J2NN 52.1
GTEX-Y8DK-0826-SM-4TT3T 51.9
GTEX-XLM4-3026-SM-4AT6L 51.2
GTEX-14ASI-3026-SM-5S2PN 51.1
GTEX-1313W-3126-SM-5LZUI 48.6
GTEX-RU72-3026-SM-5SI7Y 48.5
GTEX-145MG-3026-SM-5RQJA 48.2
GTEX-ZYFD-3026-SM-5E44C 47.9
GTEX-13FLW-1426-SM-5K7YE 47.5
GTEX-13PL6-3126-SM-5LUAR 47.4
GTEX-ZUA1-3026-SM-59HJC 47.3
GTEX-13O3O-3126-SM-5KM3H 47.1
GTEX-13NYS-3126-SM-5KLYV 46.5
GTEX-T6MN-2626-SM-32PMQ 46.4
GTEX-12126-1026-SM-5P9JJ 46.1
GTEX-11DXW-1126-SM-5H12Q 45.8
GTEX-12WSC-3026-SM-5GCNF 44.9
GTEX-13OVH-3026-SM-5MR4N 44.8
GTEX-13SLX-3126-SM-5S2Q5 43.9
GTEX-13OW6-3026-SM-5J2MI 43.8
GTEX-ZVT3-3026-SM-5E43N 43.6
GTEX-1399T-3026-SM-5KLZC 43.4
GTEX-12WSH-3026-SM-5CVNI 42.8
GTEX-12ZZZ-3026-SM-5BC67 42.7
GTEX-11GSO-2926-SM-5HL73 42.2
GTEX-R55F-1326-SM-5S2V4 41.2
GTEX-13FHO-3026-SM-5J1O9 40.8
GTEX-13QIC-2926-SM-5J2NF 40.6
GTEX-QVJO-1426-SM-2S1QY 40.6
GTEX-111FC-3126-SM-5GZZ2 39.7
GTEX-QDT8-2926-SM-32PKC 39.7
GTEX-XOTO-3026-SM-4B65M 39.7
GTEX-13VXU-2926-SM-5LU5C 39.3
GTEX-14A5I-2926-SM-5Q5CQ 38.8
GTEX-1192X-3126-SM-5N9BY 38.7
GTEX-13O3Q-2926-SM-5KM45 38.7
GTEX-1128S-2726-SM-5H12C 38.2
GTEX-144GL-3026-SM-5Q5CW 37.7
GTEX-YJ89-3026-SM-5IFJI 37.6
GTEX-12ZZY-3026-SM-5GCOU 37.3
GTEX-13FHP-3026-SM-5IJBS 36.5
GTEX-13NYB-3026-SM-5IJD7 36.4
GTEX-QVUS-2826-SM-3GADB 35.6
GTEX-13X6J-3026-SM-5Q5CU 33.9
GTEX-ZZPT-3026-SM-5GZXH 33.4
GTEX-Q2AG-2926-SM-2HMJ3 32.4
GTEX-13S7M-3126-SM-5RQJQ 31.9
GTEX-145MF-2726-SM-5O995 31.2
GTEX-NPJ8-1526-SM-2D7VU 30.7
GTEX-11EI6-3026-SM-5GZZO 30.3
GTEX-OXRN-2426-SM-2I5EQ 30.3
GTEX-11ONC-2926-SM-5P9JM 29.8
GTEX-ZE7O-3126-SM-5HL5X 29.6
GTEX-12ZZW-2926-SM-5LZUP 29.5
GTEX-131XW-3126-SM-5LZUC 28.1
GTEX-13OW8-2826-SM-5L3GC 27.4
GTEX-Y111-2726-SM-4TT3N 27.1
GTEX-11GS4-3126-SM-5A5LH 26.6
GTEX-11EMC-3226-SM-5EGKW 26.2
GTEX-ZAJG-3126-SM-5HL9J 25.3
GTEX-13OW7-3026-SM-5L3GY 25.0
GTEX-13X6K-2926-SM-5Q5D5 24.6
GTEX-13PVQ-3026-SM-5SI93 24.5
GTEX-11OC5-0726-SM-5P9JK 24.4
GTEX-139T8-1026-SM-5J2MC 24.4
GTEX-13JVG-3126-SM-5L3FH 24.3
GTEX-13OVJ-2826-SM-5L3GW 24.3
GTEX-11WQK-3026-SM-5EQL6 24.1
GTEX-11NV4-2126-SM-5N9DS 23.6
GTEX-12WSD-3126-SM-5HL7P 23.1
GTEX-NPJ7-2726-SM-2I3FT 23.1
GTEX-11OF3-2926-SM-5HL78 20.7
GTEX-N7MT-1126-SM-5SI7V 20.2
GTEX-13G51-3026-SM-5IJB8 19.5
GTEX-144FL-3026-SM-5O99C 18.2
GTEX-12WSA-2926-SM-5EQ4D 17.8
GTEX-1117F-3226-SM-5N9CT 17.6
GTEX-11GSP-3226-SM-5986O 17.3
GTEX-13IVO-2926-SM-5L3CZ 17.1
GTEX-11TTK-2926-SM-5PNYP 16.5
GTEX-13JUV-2926-SM-5LZX7 16.0
GTEX-147GR-3026-SM-5S2ML 15.2
GTEX-PWO3-0926-SM-2I5EY 14.3
GTEX-1445S-3026-SM-5O9BR 10.0
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 65.0
Samples: 108

Max RPKM: 130.2
Min RPKM: 10
Std RPKM: 24.7
Median RPKM: 71.1
GTEX-QDT8-0011-R10A-SM-32PKG 130.2
GTEX-X585-0011-R10A-SM-46MUY 114.5
GTEX-12WSE-0011-R10b-SM-5P9JV 99.9
GTEX-QMR6-0011-R10A-SM-32PKO 99.7
GTEX-145MG-0011-R10a-SM-5PNWG 98.3
GTEX-131XH-0011-R10a-SM-5EGLJ 96.1
GTEX-X4EP-0011-R10B-SM-4QASJ 95.4
GTEX-T6MN-0011-R10A-SM-32QP7 93.7
GTEX-QVJO-0011-R10A-SM-2S1QJ 92.4
GTEX-12ZZX-0011-R10b-SM-5DUWK 90.9
GTEX-WVLH-0011-R10A-SM-3MJFM 90.9
GTEX-1313W-0011-R10b-SM-5DUXA 89.6
GTEX-132Q8-0011-R10b-SM-5DUWZ 88.3
GTEX-WL46-0011-R10A-SM-3MJFQ 88.0
GTEX-NPJ7-0011-R10A-SM-2I3E5 87.7
GTEX-NL3H-0011-R10A-SM-2I3E9 87.6
GTEX-Y8DK-0011-R10A-SM-4SOK1 87.3
GTEX-13CZV-0011-R10b-SM-5LZYD 86.7
GTEX-X4XX-0011-R10B-SM-46MWO 85.9
GTEX-145LS-0011-R10a-SM-5PNUQ 85.2
GTEX-14ASI-0011-R10b-SM-5S2VZ 85.1
GTEX-ZVZQ-0011-R10b-SM-51MRT 84.6
GTEX-WZTO-0011-R10B-SM-4E3KB 84.3
GTEX-T5JC-0011-R10A-SM-32PM2 84.2
GTEX-S7SE-0011-R10A-SM-2XCDF 82.9
GTEX-131YS-0011-R10b-SM-5EQ5N 82.8
GTEX-13X6K-0011-R10a-SM-5P9JR 82.8
GTEX-13S7M-0011-R10b-SM-5PNZB 82.3
GTEX-YFC4-0011-R10a-SM-4SOK5 82.2
GTEX-Q2AG-0011-R10A-SM-2HMLA 81.8
GTEX-NPJ8-0011-R10A-SM-2YUMO 81.6
GTEX-13QIC-0011-R10a-SM-5O9C7 81.1
GTEX-WWYW-0011-R10A-SM-3NB35 81.1
GTEX-13FHO-0011-R10b-SM-5J2MM 81.0
GTEX-P44H-0011-R10A-SM-2XCEK 80.8
GTEX-12ZZY-0011-R10b-SM-5HL7W 80.3
GTEX-14BIN-0011-R10a-SM-5S2UA 80.3
GTEX-145MH-0011-R10b-SM-5PNUK 80.2
GTEX-13X6I-0011-R10a-SM-5PNWI 80.0
GTEX-12WSF-0011-R10a-SM-5LZVH 79.6
GTEX-13N1W-0011-R10b-SM-5MR4H 79.6
GTEX-13O3Q-0011-R10b-SM-5KM39 79.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 78.6
GTEX-14BIL-0011-R10a-SM-5SI75 78.0
GTEX-12WSH-0011-R10a-SM-5LZUS 77.3
GTEX-13SLX-0011-R10a-SM-5P9HV 77.2
GTEX-XLM4-0011-R10A-SM-4AT5P 77.2
GTEX-11H98-0011-R10b-SM-5NQ98 76.0
GTEX-13X6J-0011-R10b-SM-5PNWA 74.8
GTEX-QVUS-0011-R10A-SM-3GIK3 74.6
GTEX-YJ89-0011-R10a-SM-4SOK9 74.6
GTEX-ZF28-0011-R10a-SM-4WWEH 74.1
GTEX-12WSM-0011-R10a-SM-5DUWV 73.9
GTEX-ZVT3-0011-R10b-SM-57WB6 71.2
GTEX-13OW7-0011-R10a-SM-5L3H3 71.0
GTEX-13FLW-0011-R10b-SM-5LZZF 70.1
GTEX-12WSC-0011-R10a-SM-5GU57 70.0
GTEX-12ZZZ-0011-R10a-SM-5P9HC 69.2
GTEX-N7MS-0011-R10A-SM-2HMJK 68.6
GTEX-13NYS-0011-R10a-SM-5MR4S 68.1
GTEX-13OW6-0011-R10a-SM-5L3HE 67.4
GTEX-OXRN-0011-R10A-SM-2I5GC 67.2
GTEX-ZAB4-0011-R10a-SM-4SOKH 66.5
GTEX-12126-0011-R10b-SM-5BC6T 64.1
GTEX-Z93S-0011-R10a-SM-4RGNM 62.4
GTEX-13NYB-0011-R10a-SM-5KM43 62.2
GTEX-ZDXO-0011-R10a-SM-4WWD8 61.1
GTEX-TSE9-0011-R10A-SM-3DB7O 60.8
GTEX-N7MT-0011-R10A-SM-2I3E1 60.5
GTEX-13O3O-0011-R10a-SM-5LUA9 60.0
GTEX-147GR-0011-R10b-SM-5S2UM 58.5
GTEX-13FXS-0011-R10a-SM-5J2MA 57.6
GTEX-147F4-0011-R10b-SM-5S2WC 57.6
GTEX-145LU-0011-R10a-SM-5PNWJ 55.8
GTEX-13OVL-0011-R10a-SM-5L3GS 55.2
GTEX-13FLV-0011-R10b-SM-5LZZ2 52.4
GTEX-13FTZ-0011-R10b-SM-5KLZS 52.1
GTEX-RVPU-0011-R10A-SM-2XCAH 51.1
GTEX-13SLW-0011-R10a-SM-5S2UI 49.0
GTEX-13QJC-0011-R10a-SM-5SI63 48.8
GTEX-13G51-0011-R10b-SM-5LZYF 47.2
GTEX-ZUA1-0011-R10a-SM-51MT6 45.2
GTEX-13OW8-0011-R10a-SM-5L3H6 44.9
GTEX-13N2G-0011-R10a-SM-5MR34 41.6
GTEX-139TS-0011-R10a-SM-5K7TU 41.1
GTEX-13NZA-0011-R10b-SM-5KM54 39.3
GTEX-11WQC-0011-R10a-SM-57WCT 38.4
GTEX-13JUV-0011-R10b-SM-5LZXR 38.3
GTEX-11WQK-0011-R10a-SM-5BC6R 36.0
GTEX-11ZUS-0011-R10b-SM-5BC79 35.0
GTEX-ZXG5-0011-R10a-SM-57WDD 35.0
GTEX-X261-0011-R10B-SM-4E3JT 33.8
GTEX-XMD1-0011-R10A-SM-4AT4A 33.8
GTEX-12WSD-0011-R10b-SM-5GU79 33.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 31.7
GTEX-12WSA-0011-R10b-SM-5P9ET 30.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 30.3
GTEX-NL4W-0011-R10A-SM-2I3DY 27.7
GTEX-11GSP-0011-R10a-SM-5NQ7J 26.0
GTEX-OXRO-0011-R10A-SM-2I5EH 25.5
GTEX-ZE7O-0011-R10a-SM-57WAZ 22.6
GTEX-13IVO-0011-R10a-SM-5LZY3 19.3
GTEX-14753-0011-R10b-SM-5S2WE 18.9
GTEX-1477Z-0011-R10b-SM-5S2RF 16.3
GTEX-13JVG-0011-R10b-SM-5KM2P 15.4
GTEX-ZV68-0011-R10a-SM-51MT7 12.4
GTEX-131XW-0011-R10a-SM-5DUVA 11.5
GTEX-1445S-0011-R10a-SM-5PNWB 10.0
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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