Tissue expression of CLIP4 - Summary - The Human Protein Atlas

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CLIP4

TISSUE

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CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	CLIP4
Gene description	CAP-GLY domain containing linker protein family, member 4
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in smooth muscle cells in several tissues.

DATA RELIABILITY
Data reliability description	Antibody staining mainly not consistent with RNA expression data. Pending external verification. Antibody staining in cells/structures not annotated, view images.
Reliability score	Uncertain based on 1 antibody. HPA043366
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	CLIP4 (HGNC Symbol)
Synonyms	FLJ21069, RSNL2
Description	CAP-GLY domain containing linker protein family, member 4 (HGNC Symbol)
Entrez gene summary
Chromosome	2
Cytoband	p23.2
Chromosome location (bp)	29097705 - 29189643
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000115295 (version 83.38)
Entrez gene	79745
UniProt	Q8N3C7 (UniProt - Evidence at protein level)
neXtProt	NX_Q8N3C7
Antibodypedia	CLIP4 antibodies

PROTEIN BROWSER

CLIP4-001	CLIP4-003	CLIP4-004	CLIP4-005	CLIP4-009	CLIP4-011

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CLIP4-001 ENSP00000327009 ENST00000320081	Q8N3C7 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	705 aa 76.3 kDa	No	0
CLIP4-003 ENSP00000384242 ENST00000401605	Q8N3C7 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	599 aa 65 kDa	No	0
CLIP4-004 ENSP00000385148 ENST00000401617	B5MCH3 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	MEMSAT3 predicted membrane proteins SCAMPI predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	571 aa 61.5 kDa	No	0
CLIP4-005 ENSP00000385594 ENST00000404424	Q8N3C7 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	705 aa 76.3 kDa	No	0
CLIP4-009 ENSP00000393354 ENST00000449202	E7EW06 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	214 aa 23.5 kDa	No	0
CLIP4-011 ENSP00000392296 ENST00000438819	C9IYE4 [Direct mapping] CAP-Gly domain-containing linker protein 4 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	93 aa 10.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.