We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
BCAS2
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:29.4TPM
GTEx:15.3RPKM
FANTOM5:54.8Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Low
 

Antibody staining

Antibody HPA067881

 

Glandular cells

Low  
 
 
 

SMALL INTESTINE - HPA RNA-seq

Average TPM

29.4

overview Male, age 65
Sample 1
TPM: 24.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 27.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 31.6
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 33.5

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

15.3

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 15.3
Samples: 88

Max RPKM: 27.7
Min RPKM: 9
Std RPKM: 3.4
Median RPKM: 14.5
GTEX-ZQUD-0926-SM-57WE3 27.7
GTEX-WEY5-1526-SM-4LMJF 26.0
GTEX-117YX-0326-SM-5GICL 25.8
GTEX-Y5LM-1626-SM-4VDTB 21.1
GTEX-Y3IK-1726-SM-4YCCR 20.4
GTEX-WFG8-1626-SM-4LVMB 20.4
GTEX-13O61-1326-SM-5KM31 20.0
GTEX-WFG7-1726-SM-4LVME 19.9
GTEX-111CU-1326-SM-5NQ8L 19.7
GTEX-1192X-2526-SM-59868 19.7
GTEX-13111-1426-SM-5DUW3 19.6
GTEX-ZF2S-1726-SM-57WFT 19.6
GTEX-12WSK-1526-SM-5CVNO 18.8
GTEX-XMK1-1826-SM-4B66F 18.4
GTEX-148VJ-2226-SM-5NQ9M 18.2
GTEX-11P82-0826-SM-5P9GU 18.1
GTEX-ZP4G-1626-SM-57WGD 18.1
GTEX-131XG-1726-SM-5LZUR 18.0
GTEX-11VI4-1626-SM-5EQKO 17.5
GTEX-1399U-2126-SM-5IFEZ 17.4
GTEX-XGQ4-1326-SM-4GIDU 17.1
GTEX-13FTW-2026-SM-5IJE2 17.0
GTEX-Y114-1426-SM-4TT6W 16.8
GTEX-WRHK-1026-SM-4MVOD 16.8
GTEX-139YR-2226-SM-5IFFW 16.8
GTEX-13QBU-1926-SM-5IJEW 16.8
GTEX-13RTK-0826-SM-5Q5C6 16.7
GTEX-11NSD-1726-SM-5N9C3 16.3
GTEX-145LT-1026-SM-5LU9O 15.9
GTEX-ZVP2-1726-SM-5GU5P 15.7
GTEX-ZQG8-2526-SM-57WEQ 15.6
GTEX-ZPIC-2326-SM-57WDW 15.5
GTEX-X15G-1426-SM-4PQZK 15.4
GTEX-ZVT2-2126-SM-5NQ93 15.4
GTEX-YB5E-1526-SM-5IFIE 15.3
GTEX-11EQ9-1326-SM-5985X 15.0
GTEX-13OVI-1926-SM-5IJCG 14.8
GTEX-145ME-0926-SM-5O9AR 14.8
GTEX-13O21-1026-SM-5IJDU 14.8
GTEX-13113-1226-SM-5EGHT 14.7
GTEX-ZLV1-1126-SM-4WWBW 14.6
GTEX-139T6-1026-SM-5IJGC 14.6
GTEX-ZTSS-0926-SM-59865 14.6
GTEX-12BJ1-1926-SM-5HL9Z 14.5
GTEX-131XF-1326-SM-5GCMQ 14.5
GTEX-13PL7-2626-SM-5IFH4 14.4
GTEX-ZYFG-2026-SM-5E43Y 14.3
GTEX-VJYA-0926-SM-4KL1N 14.3
GTEX-ZLFU-1526-SM-4WWBT 14.3
GTEX-11P7K-1626-SM-5GU63 14.0
GTEX-YEC4-1726-SM-4W21E 14.0
GTEX-ZYWO-1526-SM-5SIAL 13.9
GTEX-WFJO-0926-SM-4LVM2 13.9
GTEX-133LE-1426-SM-5IFH1 13.8
GTEX-XXEK-1026-SM-4BRUW 13.8
GTEX-YF7O-1826-SM-5IFIU 13.7
GTEX-13FH7-1226-SM-5IJFK 13.7
GTEX-ZTPG-2626-SM-57WFX 13.7
GTEX-13D11-0726-SM-5LZZB 13.7
GTEX-ZXES-1526-SM-5NQ95 13.7
GTEX-ZTX8-0526-SM-59HLD 13.5
GTEX-ZVZP-1826-SM-5GZXB 13.4
GTEX-ZZ64-0526-SM-5GZXM 13.3
GTEX-11XUK-1426-SM-5EQMG 13.3
GTEX-UPK5-2026-SM-4JBIM 13.3
GTEX-1122O-1326-SM-5H11F 13.0
GTEX-XBED-1426-SM-4AT4G 12.9
GTEX-1399S-2026-SM-5KM4B 12.9
GTEX-14DAR-1426-SM-5RQIR 12.9
GTEX-XUZC-1426-SM-4BRV3 12.7
GTEX-WH7G-1626-SM-4LVMY 12.7
GTEX-Z9EW-0926-SM-5CVMM 12.7
GTEX-Y9LG-1626-SM-5IFHM 12.6
GTEX-WQUQ-2426-SM-4MVNW 12.5
GTEX-ZEX8-1826-SM-57WBH 12.5
GTEX-ZA64-1226-SM-5HL7B 12.5
GTEX-14E6E-1626-SM-5RQI7 12.4
GTEX-X5EB-1626-SM-4E3IV 12.1
GTEX-1399R-2026-SM-5K7WN 12.1
GTEX-ZPCL-1726-SM-57WEO 12.0
GTEX-11DXX-1626-SM-5H11H 12.0
GTEX-XAJ8-0526-SM-47JYK 11.8
GTEX-11I78-1126-SM-5A5K5 11.1
GTEX-11DXZ-1326-SM-5H11X 11.0
GTEX-ZC5H-2326-SM-4WAYT 10.2
GTEX-13CF3-1226-SM-5LZXN 9.9
GTEX-VUSG-1726-SM-4KKZL 9.1
GTEX-111YS-1426-SM-5GID8 9.0
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

54.8

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 54.8
FF:10024-101D6 15,40,85 years, mixed 54.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.