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Term
Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

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Score

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Antibodies

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CASQ2
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CASQ2

Gene description

Calsequestrin 2 (cardiac muscle)

Protein class

Disease related genes
Predicted secreted proteins

Predicted localization

Secreted

Number of transcripts

1
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enriched (heart muscle)
GTEx:Group enriched (heart muscle, skeletal muscle)
FANTOM5:Tissue enhanced (heart muscle)

Protein evidence

Evidence at protein level

Protein expression

Selective cytoplasmic expression in heart and skeletal muscle.

DATA RELIABILITY

Data reliability
description

Antibody staining consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA027285 , HPA055298
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
N/A
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Heart muscle

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (heart muscle)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (heart muscle, skeletal muscle)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (heart muscle)

GENE INFORMATION

Gene name

CASQ2 (HGNC Symbol)

Synonyms

PDIB2

Description

Calsequestrin 2 (cardiac muscle) (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene specifies the cardiac muscle family member of the calsequestrin family. Calsequestrin is localized to the sarcoplasmic reticulum in cardiac and slow skeletal muscle cells. The protein is a calcium binding protein that stores calcium for muscle function. Mutations in this gene cause stress-induced polymorphic ventricular tachycardia, also referred to as catecholaminergic polymorphic ventricular tachycardia 2 (CPVT2), a disease characterized by bidirectional ventricular tachycardia that may lead to cardiac arrest. [provided by RefSeq, Jul 2008]

Chromosome

1

Cytoband

p13.1

Chromosome location (bp)

115700007 - 115768781

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000118729 (version 83.38)

Entrez gene

845

UniProt

O14958 (UniProt - Evidence at protein level)

neXtProt

NX_O14958

Antibodypedia

CASQ2 antibodies

PROTEIN BROWSER

CASQ2-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CASQ2-001
ENSP00000261448
ENST00000261448
O14958 [Direct mapping]
Calsequestrin-2
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Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002027 [regulation of heart rate]
GO:0005509 [calcium ion binding]
GO:0005513 [detection of calcium ion]
GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0005737 [cytoplasm]
GO:0005891 [voltage-gated calcium channel complex]
GO:0006941 [striated muscle contraction]
GO:0010649 [regulation of cell communication by electrical coupling]
GO:0010880 [regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum]
GO:0010881 [regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion]
GO:0014701 [junctional sarcoplasmic reticulum membrane]
GO:0016529 [sarcoplasmic reticulum]
GO:0030018 [Z disc]
GO:0030314 [junctional membrane complex]
GO:0033017 [sarcoplasmic reticulum membrane]
GO:0033018 [sarcoplasmic reticulum lumen]
GO:0034220 [ion transmembrane transport]
GO:0034704 [calcium channel complex]
GO:0042803 [protein homodimerization activity]
GO:0043267 [negative regulation of potassium ion transport]
GO:0045214 [sarcomere organization]
GO:0048306 [calcium-dependent protein binding]
GO:0051208 [sequestering of calcium ion]
GO:0051258 [protein polymerization]
GO:0055085 [transmembrane transport]
GO:0060048 [cardiac muscle contraction]
GO:0060306 [regulation of membrane repolarization]
GO:0060315 [negative regulation of ryanodine-sensitive calcium-release channel activity]
GO:0071313 [cellular response to caffeine]
GO:0086029 [Purkinje myocyte to ventricular cardiac muscle cell signaling]
GO:1901017 [negative regulation of potassium ion transmembrane transporter activity]
Show all
399 aa
46.4 kDa
Yes 0

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