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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:20.7RPKM
FANTOM5:61.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA042890

 

Antibody HPA050453

 

Glial cells

Low   Medium  

Neuronal cells

Medium   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

20.7

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 20.7
Samples: 117

Max RPKM: 51.8
Min RPKM: 5.7
Std RPKM: 7.7
Median RPKM: 19
GTEX-13OVJ-0011-R5a-SM-5P9H7 51.8
GTEX-11H98-0011-R5b-SM-57WCF 43.0
GTEX-12WSB-0011-R5b-SM-5GU67 40.3
GTEX-13JVG-0011-R5a-SM-5MR4O 39.5
GTEX-NPJ7-0011-R5a-SM-33HBK 39.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 39.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 37.8
GTEX-12WSA-0011-R5b-SM-5GU5I 36.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 32.6
GTEX-1445S-0011-R5a-SM-5PNUS 31.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 30.4
GTEX-XMD1-0011-R5A-SM-4AT47 30.0
GTEX-13X6I-0011-R5a-SM-5PNWW 29.5
GTEX-139TT-0011-R5b-SM-5K7W8 29.3
GTEX-144GO-0011-R5a-SM-5PNUR 29.0
GTEX-13OW6-0011-R5a-SM-5O9BK 28.7
GTEX-P44H-0011-R5A-SM-2XCEX 28.5
GTEX-11WQC-0011-R5a-SM-5BC74 28.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 28.0
GTEX-QMR6-0011-R5A-SM-32PKT 27.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 27.1
GTEX-X261-0011-R5A-SM-3NMB4 26.8
GTEX-13CZV-0011-R5a-SM-5K7XA 26.7
GTEX-11UD1-0011-R5b-SM-5P9FP 25.0
GTEX-N7MT-0011-R5a-SM-2I3G6 25.0
GTEX-13FLV-0011-R5a-SM-5LZWT 24.3
GTEX-QVJO-0011-R5A-SM-2S1QM 24.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 24.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 23.8
GTEX-13NYS-0011-R5a-SM-5MR4D 23.7
GTEX-S7SE-0011-R5A-SM-2XCDA 23.7
GTEX-ZE7O-0011-R5a-SM-57WBO 23.6
GTEX-OXRN-0011-R5A-SM-2I5EF 23.4
GTEX-12ZZX-0011-R5a-SM-5HL89 23.2
GTEX-139T8-0011-R5b-SM-5J1MO 23.1
GTEX-ZVT3-0011-R5a-SM-51MSI 23.0
GTEX-139TS-0011-R5b-SM-5J2MZ 22.9
GTEX-ZV68-0011-R5a-SM-4YCDW 22.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.4
GTEX-R55E-0011-R5A-SM-2TC5N 22.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 22.1
GTEX-NL4W-0011-R5a-SM-2I3GD 22.0
GTEX-WVLH-0011-R5A-SM-3MJFW 21.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 21.7
GTEX-TSE9-0011-R5A-SM-3DB7J 21.6
GTEX-ZXG5-0011-R5b-SM-57WBN 21.6
GTEX-T6MN-0011-R5A-SM-32QPD 21.1
GTEX-11GSP-0011-R5a-SM-57WBE 20.9
GTEX-13OVH-0011-R5b-SM-5KM4L 20.9
GTEX-13OVL-0011-R5b-SM-5L3FU 20.7
GTEX-RU72-0011-R5A-SM-2TF6U 20.1
GTEX-13JUV-0011-R5a-SM-5LZY5 19.9
GTEX-PVOW-0011-R5A-SM-32PL7 19.8
GTEX-T2IS-0011-R5A-SM-32QP4 19.7
GTEX-OHPN-0011-R5A-SM-2I5FF 19.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 19.5
GTEX-YFC4-0011-R5a-SM-4RGLR 19.3
GTEX-12WSD-0011-R5b-SM-5CVNG 19.2
GTEX-13OW5-0011-R5b-SM-5L3FR 19.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 18.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 18.6
GTEX-RVPU-0011-R5A-SM-2XCAD 18.4
GTEX-13FLW-0011-R5a-SM-5LZX6 18.1
GTEX-S7PM-0011-R5A-SM-3NM8G 18.0
GTEX-131YS-0011-R5b-SM-5K7YB 17.8
GTEX-11OF3-0011-R5a-SM-57WB4 17.7
GTEX-132Q8-0011-R5a-SM-5IJDM 17.7
GTEX-X4XX-0011-R5A-SM-46MWN 17.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 17.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 17.3
GTEX-YJ89-0011-R5a-SM-4V6GM 17.3
GTEX-13NYB-0011-R5a-SM-5MR45 17.2
GTEX-14BIN-0011-R5b-SM-5SI78 17.2
GTEX-13CIG-0011-R5b-SM-5L3F2 17.0
GTEX-1477Z-0011-R5b-SM-5PNUO 17.0
GTEX-13OW7-0011-R5b-SM-5O9DM 16.9
GTEX-13CF2-0011-R5a-SM-5LZWS 16.7
GTEX-13X6K-0011-R5b-SM-5PNUE 16.7
GTEX-14ABY-0011-R5b-SM-5SI7B 16.7
GTEX-T5JC-0011-R5A-SM-32PLK 16.6
GTEX-WWYW-0011-R5A-SM-3NB3E 16.6
GTEX-13112-0011-R5b-SM-5DUV8 16.4
GTEX-WZTO-0011-R5B-SM-3NMC5 16.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 16.1
GTEX-NL3H-0011-R5a-SM-2I3GB 16.1
GTEX-145LS-0011-R5a-SM-5SI65 16.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 15.9
GTEX-145MG-0011-R5b-SM-5S2VU 15.9
GTEX-14BIM-0011-R5b-SM-5S2RM 15.8
GTEX-N7MS-0011-R5a-SM-2HMK8 15.7
GTEX-XOTO-0011-R5A-SM-4B657 15.6
GTEX-13G51-0011-R5a-SM-5L3EB 15.5
GTEX-13VXU-0011-R5a-SM-5O9D7 15.5
GTEX-12WSC-0011-R5b-SM-5CVNS 15.4
GTEX-RVPV-0011-R5A-SM-2TF69 15.4
GTEX-13SLX-0011-R5a-SM-5O9BV 15.0
GTEX-13FHP-0011-R5b-SM-5LZY2 14.7
GTEX-13X6J-0011-R5b-SM-5PNWT 14.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 14.5
GTEX-144GL-0011-R5b-SM-5PNUJ 14.3
GTEX-13FXS-0011-R5b-SM-5LZYE 14.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 14.2
GTEX-13S7M-0011-R5b-SM-5P9HS 13.8
GTEX-1313W-0011-R5b-SM-5L3EP 13.5
GTEX-ZUA1-0011-R5b-SM-51MTG 13.1
GTEX-12WSH-0011-R5b-SM-5P9F3 12.9
GTEX-12WSF-0011-R5a-SM-5HL8K 12.6
GTEX-UTHO-0011-R5A-SM-3GIJD 12.6
GTEX-13O3O-0011-R5b-SM-5KM44 12.3
GTEX-11NV4-0011-R5a-SM-5NQ88 11.9
GTEX-145MH-0011-R5a-SM-5P9JT 11.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 11.4
GTEX-1399T-0011-R5b-SM-5IJDK 11.2
GTEX-13NZA-0011-R5b-SM-5KM4K 9.8
GTEX-WL46-0011-R5A-SM-3LK6V 7.6
GTEX-Z93S-0011-R5b-SM-4RGNI 6.7
GTEX-X585-0011-R5A-SM-46MVI 5.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

61.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 61.9
FF:10164-103B2 76 years, female 79.4
FF:10379-105H1 89 years, female 44.3

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