Tissue expression of UBIAD1 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	UBIAD1
Gene description	UbiA prenyltransferase domain containing 1
Protein class	Disease related genes Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	3
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	UBIAD1 (HGNC Symbol)
Synonyms	SCCD, TERE1
Description	UbiA prenyltransferase domain containing 1 (HGNC Symbol)
Entrez gene summary	This gene encodes a protein thought to be involved in cholesterol and phospholipid metabolism. Mutations in this gene are associated with Schnyder crystalline corneal dystrophy. [provided by RefSeq, Oct 2008]
Chromosome	1
Cytoband	p36.22
Chromosome location (bp)	11273206 - 11296049
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000120942 (version 83.38)
Entrez gene	29914
UniProt	Q9Y5Z9 (UniProt - Evidence at protein level)
neXtProt	NX_Q9Y5Z9
Antibodypedia	UBIAD1 antibodies

PROTEIN BROWSER

UBIAD1-001	UBIAD1-002	UBIAD1-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
UBIAD1-001 ENSP00000366006 ENST00000376810	Q9Y5Z9 [Direct mapping] UbiA prenyltransferase domain-containing protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 8TM proteins predicted by MDM Disease related genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0004659 [prenyltransferase activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005737 [cytoplasm] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0006744 [ubiquinone biosynthetic process] GO:0009234 [menaquinone biosynthetic process] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0016209 [antioxidant activity] GO:0030173 [integral component of Golgi membrane] GO:0031966 [mitochondrial membrane] GO:0042371 [vitamin K biosynthetic process] Show all	338 aa 36.8 kDa	No	8
UBIAD1-002 ENSP00000473453 ENST00000483738	R4GN21 [Direct mapping] UbiA prenyltransferase domain-containing protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	77 aa 8.2 kDa	No	4
UBIAD1-003 ENSP00000366000 ENST00000376804	Q9Y5Z9 [Direct mapping] UbiA prenyltransferase domain-containing protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Disease related genes Protein evidence (Ezkurdia et al 2014) Show all	GO:0004659 [prenyltransferase activity] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005737 [cytoplasm] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0006744 [ubiquinone biosynthetic process] GO:0009234 [menaquinone biosynthetic process] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0016209 [antioxidant activity] GO:0030173 [integral component of Golgi membrane] GO:0031966 [mitochondrial membrane] GO:0042371 [vitamin K biosynthetic process] Show all	179 aa 19.5 kDa	No	4