Tissue expression of HERPUD2 - Summary - The Human Protein Atlas

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HERPUD2

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	HERPUD2
Gene description	HERPUD family member 2
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in most tissues.

DATA RELIABILITY
Data reliability description	Antibody staining mainly not consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 1 antibody. HPA015630
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	HERPUD2 (HGNC Symbol)
Synonyms	FLJ22313
Description	HERPUD family member 2 (HGNC Symbol)
Entrez gene summary
Chromosome	7
Cytoband	p14.2
Chromosome location (bp)	35632659 - 35695571
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000122557 (version 83.38)
Entrez gene	64224
UniProt	Q9BSE4 (UniProt - Evidence at protein level)
neXtProt	NX_Q9BSE4
Antibodypedia	HERPUD2 antibodies

PROTEIN BROWSER

HERPUD2-001	HERPUD2-002	HERPUD2-003	HERPUD2-005	HERPUD2-006	HERPUD2-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
HERPUD2-001 ENSP00000379390 ENST00000396081	Q9BSE4 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein A0A024RA77 [Target identity:100%; Query identity:100%] Uncharacterized protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] GO:0006986 [response to unfolded protein] GO:0007283 [spermatogenesis] GO:0016021 [integral component of membrane] Show all	406 aa 45.1 kDa	No	1
HERPUD2-002 ENSP00000310729 ENST00000311350	Q9BSE4 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein A0A024RA77 [Target identity:100%; Query identity:100%] Uncharacterized protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] GO:0006986 [response to unfolded protein] GO:0016021 [integral component of membrane] Show all	406 aa 45.1 kDa	No	1
HERPUD2-003 ENSP00000412895 ENST00000427455	C9JV48 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Show all	Predicted intracellular proteins Show all		61 aa 6.7 kDa	No	0
HERPUD2-005 ENSP00000415475 ENST00000438224	C9JDD7 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Show all	Predicted intracellular proteins Show all		180 aa 19.7 kDa	No	0
HERPUD2-006 ENSP00000391015 ENST00000413517	C9J4Q7 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Show all	Predicted intracellular proteins Show all		190 aa 20.9 kDa	No	0
HERPUD2-008 ENSP00000474978 ENST00000603731	S4R420 [Direct mapping] Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Show all	Predicted intracellular proteins Show all		18 aa 2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.