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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:212.3TPM
GTEx:13.4RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Low
Neuropil:Medium
 

Antibody staining

Antibody HPA044572

 

Antibody HPA056798

 

Antibody CAB016733

 

Antibody CAB034368

 

Endothelial cells

Not detected   Not detected   Low   Not detected  

Glial cells

Not detected   Not detected   Not detected   Not detected  

Neuronal cells

Not detected   Low   Medium   Low  

Neuropil

Medium   Medium   Not detected   Low  
       
       
       

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

212.3

N/A Male, age 5
Sample 1
TPM: 460.8
overview Female, age 40
Sample 2
TPM: 58.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 118.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

13.4

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 11.1
Samples: 114

Max RPKM: 73
Min RPKM: 0
Std RPKM: 8.5
Median RPKM: 8.9
GTEX-WHSE-3026-SM-3P5ZH 73.0
GTEX-WL46-2926-SM-3LK82 30.4
GTEX-13PVQ-3026-SM-5SI93 30.3
GTEX-N7MT-1126-SM-5SI7V 28.5
GTEX-1313W-3126-SM-5LZUI 28.3
GTEX-11GS4-3126-SM-5A5LH 26.1
GTEX-13SLX-3126-SM-5S2Q5 25.3
GTEX-YFC4-3126-SM-5PNV6 23.6
GTEX-ZYFD-3026-SM-5E44C 21.9
GTEX-13FHO-3026-SM-5J1O9 21.3
GTEX-13FLW-1426-SM-5K7YE 21.1
GTEX-11DXY-3226-SM-5GIDE 20.7
GTEX-12ZZY-3026-SM-5GCOU 20.5
GTEX-13OW6-3026-SM-5J2MI 19.2
GTEX-13OVH-3026-SM-5MR4N 18.8
GTEX-13NYB-3026-SM-5IJD7 18.7
GTEX-111FC-3126-SM-5GZZ2 18.6
GTEX-13JUV-2926-SM-5LZX7 17.5
GTEX-11OC5-0726-SM-5P9JK 16.5
GTEX-ZUA1-3026-SM-59HJC 16.2
GTEX-11ZUS-2926-SM-5FQSL 15.9
GTEX-131YS-3126-SM-5KLYT 15.6
GTEX-13FHP-3026-SM-5IJBS 15.1
GTEX-12126-1026-SM-5P9JJ 15.0
GTEX-13G51-3026-SM-5IJB8 14.9
GTEX-Q2AG-2926-SM-2HMJ3 14.8
GTEX-13VXU-2926-SM-5LU5C 13.8
GTEX-ZAJG-3126-SM-5HL9J 13.2
GTEX-12ZZX-2926-SM-5GCOQ 13.1
GTEX-XOTO-3026-SM-4B65M 13.0
GTEX-11WQK-3026-SM-5EQL6 12.7
GTEX-T6MN-2626-SM-32PMQ 12.5
GTEX-13JVG-3126-SM-5L3FH 12.3
GTEX-144GL-3026-SM-5Q5CW 12.2
GTEX-14BMV-3026-SM-5S2PQ 12.1
GTEX-T2IS-3026-SM-32QPM 12.1
GTEX-X585-3026-SM-46MWF 11.9
GTEX-14ASI-3026-SM-5S2PN 11.3
GTEX-Y111-2726-SM-4TT3N 11.1
GTEX-12ZZZ-3026-SM-5BC67 10.9
GTEX-QVUS-2826-SM-3GADB 10.8
GTEX-UTHO-3026-SM-3GAFB 10.7
GTEX-XLM4-3026-SM-4AT6L 10.7
GTEX-WVLH-3026-SM-3MJG9 10.6
GTEX-ZAK1-3026-SM-5S2MJ 10.5
GTEX-13NYC-2826-SM-5K7WR 10.3
GTEX-147GR-3026-SM-5S2ML 10.2
GTEX-13X6K-2926-SM-5Q5D5 10.1
GTEX-WWYW-3126-SM-3NB39 10.0
GTEX-WZTO-2926-SM-3NM9I 9.7
GTEX-12WSD-3126-SM-5HL7P 9.3
GTEX-13PL6-3126-SM-5LUAR 9.3
GTEX-13OW8-2826-SM-5L3GC 9.2
GTEX-T5JC-2426-SM-3NMDB 9.2
GTEX-11ONC-2926-SM-5P9JM 9.0
GTEX-1399T-3026-SM-5KLZC 8.9
GTEX-145LS-3126-SM-5Q5BY 8.9
GTEX-14A5I-2926-SM-5Q5CQ 8.9
GTEX-NPJ7-2726-SM-2I3FT 8.8
GTEX-13OVJ-2826-SM-5L3GW 8.7
GTEX-13NYS-3126-SM-5KLYV 8.1
GTEX-1192X-3126-SM-5N9BY 8.0
GTEX-13O3O-3126-SM-5KM3H 8.0
GTEX-13O3Q-2926-SM-5KM45 7.7
GTEX-117XS-3026-SM-5N9CA 7.6
GTEX-145MG-3026-SM-5RQJA 7.5
GTEX-YJ89-3026-SM-5IFJI 7.5
GTEX-ZE7O-3126-SM-5HL5X 7.5
GTEX-1128S-2726-SM-5H12C 7.4
GTEX-PWO3-0926-SM-2I5EY 7.4
GTEX-12WSC-3026-SM-5GCNF 7.2
GTEX-145MH-3026-SM-5Q5DZ 7.2
GTEX-NPJ8-1526-SM-2D7VU 7.2
GTEX-11NUK-2926-SM-5A5MD 7.0
GTEX-11TTK-2926-SM-5PNYP 7.0
GTEX-12WSH-3026-SM-5CVNI 7.0
GTEX-139T8-1026-SM-5J2MC 6.9
GTEX-TSE9-3026-SM-3DB76 6.8
GTEX-11DXW-1126-SM-5H12Q 6.7
GTEX-13QIC-2926-SM-5J2NF 6.7
GTEX-RNOR-2326-SM-2TF4I 6.7
GTEX-11PRG-2926-SM-5987A 6.6
GTEX-13FXS-3126-SM-5J2NN 6.5
GTEX-145MF-2726-SM-5O995 6.5
GTEX-13X6J-3026-SM-5Q5CU 6.2
GTEX-11EMC-3226-SM-5EGKW 6.1
GTEX-13OW7-3026-SM-5L3GY 6.1
GTEX-X4XX-3026-SM-3NMB2 6.1
GTEX-11NV4-2126-SM-5N9DS 5.9
GTEX-13S7M-3126-SM-5RQJQ 5.9
GTEX-PVOW-2526-SM-2XCF7 5.7
GTEX-131XW-3126-SM-5LZUC 5.6
GTEX-Y8DK-0826-SM-4TT3T 5.5
GTEX-1445S-3026-SM-5O9BR 5.4
GTEX-QDT8-2926-SM-32PKC 5.4
GTEX-Z93S-2926-SM-57WB9 5.4
GTEX-1117F-3226-SM-5N9CT 5.3
GTEX-12ZZW-2926-SM-5LZUP 5.2
GTEX-144FL-3026-SM-5O99C 5.2
GTEX-QMR6-1426-SM-32PLA 5.0
GTEX-11GSO-2926-SM-5HL73 4.9
GTEX-OXRN-2426-SM-2I5EQ 4.9
GTEX-13IVO-2926-SM-5L3CZ 4.5
GTEX-132Q8-3026-SM-5PNVG 4.4
GTEX-11EI6-3026-SM-5GZZO 4.3
GTEX-11GSP-3226-SM-5986O 4.0
GTEX-R55F-1326-SM-5S2V4 3.9
GTEX-12WSA-2926-SM-5EQ4D 3.7
GTEX-RU72-3026-SM-5SI7Y 3.6
GTEX-ZVT3-3026-SM-5E43N 3.6
GTEX-QVJO-1426-SM-2S1QY 3.4
GTEX-ZZPT-3026-SM-5GZXH 2.7
GTEX-11O72-2926-SM-5BC4V 2.6
GTEX-11OF3-2926-SM-5HL78 0.0
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 15.7
Samples: 108

Max RPKM: 64.4
Min RPKM: 2
Std RPKM: 10.4
Median RPKM: 13.2
GTEX-13OVL-0011-R10a-SM-5L3GS 64.4
GTEX-ZUA1-0011-R10a-SM-51MT6 46.0
GTEX-WWYW-0011-R10A-SM-3NB35 43.6
GTEX-WVLH-0011-R10A-SM-3MJFM 42.1
GTEX-YFC4-0011-R10a-SM-4SOK5 38.6
GTEX-N7MT-0011-R10A-SM-2I3E1 33.5
GTEX-12ZZY-0011-R10b-SM-5HL7W 32.8
GTEX-145MH-0011-R10b-SM-5PNUK 32.5
GTEX-S7SE-0011-R10A-SM-2XCDF 32.0
GTEX-147GR-0011-R10b-SM-5S2UM 29.9
GTEX-13SLX-0011-R10a-SM-5P9HV 28.8
GTEX-ZVZQ-0011-R10b-SM-51MRT 28.3
GTEX-12WSE-0011-R10b-SM-5P9JV 28.1
GTEX-13RTJ-0011-R10b-SM-5O9CW 26.1
GTEX-13O3O-0011-R10a-SM-5LUA9 25.8
GTEX-13X6K-0011-R10a-SM-5P9JR 25.8
GTEX-WZTO-0011-R10B-SM-4E3KB 25.8
GTEX-13QJC-0011-R10a-SM-5SI63 25.7
GTEX-131YS-0011-R10b-SM-5EQ5N 25.4
GTEX-12126-0011-R10b-SM-5BC6T 25.3
GTEX-12WSD-0011-R10b-SM-5GU79 24.5
GTEX-13X6I-0011-R10a-SM-5PNWI 24.2
GTEX-14BIN-0011-R10a-SM-5S2UA 23.4
GTEX-13FLW-0011-R10b-SM-5LZZF 21.6
GTEX-1313W-0011-R10b-SM-5DUXA 21.0
GTEX-12WSC-0011-R10a-SM-5GU57 20.3
GTEX-13NYB-0011-R10a-SM-5KM43 20.3
GTEX-12ZZX-0011-R10b-SM-5DUWK 19.8
GTEX-ZDXO-0011-R10a-SM-4WWD8 19.4
GTEX-13G51-0011-R10b-SM-5LZYF 18.9
GTEX-ZE7O-0011-R10a-SM-57WAZ 18.6
GTEX-13NYS-0011-R10a-SM-5MR4S 18.4
GTEX-Q2AG-0011-R10A-SM-2HMLA 18.3
GTEX-X585-0011-R10A-SM-46MUY 18.2
GTEX-Z93S-0011-R10a-SM-4RGNM 17.6
GTEX-13OW6-0011-R10a-SM-5L3HE 17.5
GTEX-T5JC-0011-R10A-SM-32PM2 17.4
GTEX-12WSF-0011-R10a-SM-5LZVH 16.7
GTEX-132Q8-0011-R10b-SM-5DUWZ 16.4
GTEX-13N2G-0011-R10a-SM-5MR34 16.2
GTEX-X4EP-0011-R10B-SM-4QASJ 16.2
GTEX-T6MN-0011-R10A-SM-32QP7 16.1
GTEX-131XH-0011-R10a-SM-5EGLJ 16.0
GTEX-14ASI-0011-R10b-SM-5S2VZ 16.0
GTEX-13N1W-0011-R10b-SM-5MR4H 15.8
GTEX-13QIC-0011-R10a-SM-5O9C7 15.8
GTEX-13JUV-0011-R10b-SM-5LZXR 15.3
GTEX-12WSM-0011-R10a-SM-5DUWV 15.0
GTEX-XLM4-0011-R10A-SM-4AT5P 14.3
GTEX-Y8DK-0011-R10A-SM-4SOK1 14.3
GTEX-13FXS-0011-R10a-SM-5J2MA 14.0
GTEX-12WSH-0011-R10a-SM-5LZUS 13.8
GTEX-13CZV-0011-R10b-SM-5LZYD 13.7
GTEX-145LS-0011-R10a-SM-5PNUQ 13.4
GTEX-13O3Q-0011-R10b-SM-5KM39 13.0
GTEX-13OW8-0011-R10a-SM-5L3H6 12.9
GTEX-YJ89-0011-R10a-SM-4SOK9 12.8
GTEX-13X6J-0011-R10b-SM-5PNWA 12.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 12.4
GTEX-NL3H-0011-R10A-SM-2I3E9 12.4
GTEX-13JVG-0011-R10b-SM-5KM2P 11.6
GTEX-13S7M-0011-R10b-SM-5PNZB 11.6
GTEX-13FLV-0011-R10b-SM-5LZZ2 11.3
GTEX-ZF28-0011-R10a-SM-4WWEH 11.2
GTEX-WL46-0011-R10A-SM-3MJFQ 11.0
GTEX-11H98-0011-R10b-SM-5NQ98 10.9
GTEX-13OVJ-0011-R10b-SM-5L3HT 10.6
GTEX-13OW7-0011-R10a-SM-5L3H3 10.5
GTEX-N7MS-0011-R10A-SM-2HMJK 10.5
GTEX-XMD1-0011-R10A-SM-4AT4A 10.3
GTEX-QVJO-0011-R10A-SM-2S1QJ 10.2
GTEX-ZAB4-0011-R10a-SM-4SOKH 10.0
GTEX-11ZUS-0011-R10b-SM-5BC79 9.6
GTEX-139TS-0011-R10a-SM-5K7TU 9.5
GTEX-QMR6-0011-R10A-SM-32PKO 9.2
GTEX-X261-0011-R10B-SM-4E3JT 9.2
GTEX-OXRO-0011-R10A-SM-2I5EH 9.1
GTEX-NPJ7-0011-R10A-SM-2I3E5 8.6
GTEX-ZXG5-0011-R10a-SM-57WDD 8.6
GTEX-145MG-0011-R10a-SM-5PNWG 8.5
GTEX-1477Z-0011-R10b-SM-5S2RF 8.4
GTEX-P44H-0011-R10A-SM-2XCEK 8.2
GTEX-RVPU-0011-R10A-SM-2XCAH 8.0
GTEX-1445S-0011-R10a-SM-5PNWB 7.8
GTEX-NPJ8-0011-R10A-SM-2YUMO 7.7
GTEX-11WQC-0011-R10a-SM-57WCT 7.6
GTEX-X4XX-0011-R10B-SM-46MWO 7.6
GTEX-14BIL-0011-R10a-SM-5SI75 7.3
GTEX-OXRN-0011-R10A-SM-2I5GC 7.1
GTEX-11WQK-0011-R10a-SM-5BC6R 7.0
GTEX-QVUS-0011-R10A-SM-3GIK3 6.8
GTEX-13NZA-0011-R10b-SM-5KM54 6.6
GTEX-13FHO-0011-R10b-SM-5J2MM 6.5
GTEX-11GSP-0011-R10a-SM-5NQ7J 5.7
GTEX-ZV68-0011-R10a-SM-51MT7 5.3
GTEX-145LU-0011-R10a-SM-5PNWJ 5.2
GTEX-TSE9-0011-R10A-SM-3DB7O 5.2
GTEX-147F4-0011-R10b-SM-5S2WC 4.8
GTEX-12ZZW-0011-R10b-SM-5HL9X 4.7
GTEX-NL4W-0011-R10A-SM-2I3DY 4.7
GTEX-131XW-0011-R10a-SM-5DUVA 4.2
GTEX-13FTZ-0011-R10b-SM-5KLZS 4.2
GTEX-ZVT3-0011-R10b-SM-57WB6 4.1
GTEX-12WSA-0011-R10b-SM-5P9ET 4.0
GTEX-13IVO-0011-R10a-SM-5LZY3 3.9
GTEX-14753-0011-R10b-SM-5S2WE 3.7
GTEX-13SLW-0011-R10a-SM-5S2UI 3.3
GTEX-QDT8-0011-R10A-SM-32PKG 2.0
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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