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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:25.6TPM
GTEx:8.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:Low
Neuronal cells:Medium
Neuropil:Low
 

Antibody staining

Antibody HPA003044

 

Antibody HPA003643

 

Antibody CAB009546

 

Endothelial cells

Not detected   Not detected   Medium  

Glial cells

Low   Not detected   Low  

Neuronal cells

Medium   Not detected   High  

Neuropil

Low   Low   Low  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

25.6

N/A Male, age 5
Sample 1
TPM: 33.6
overview Female, age 40
Sample 2
TPM: 30.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 12.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

8.7

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 8.9
Samples: 114

Max RPKM: 19.5
Min RPKM: 2.1
Std RPKM: 3.5
Median RPKM: 8.4
GTEX-13OVJ-2826-SM-5L3GW 19.5
GTEX-13JVG-3126-SM-5L3FH 18.9
GTEX-ZE7O-3126-SM-5HL5X 17.4
GTEX-QDT8-2926-SM-32PKC 15.5
GTEX-12ZZW-2926-SM-5LZUP 15.4
GTEX-11EMC-3226-SM-5EGKW 15.3
GTEX-RU72-3026-SM-5SI7Y 15.2
GTEX-11GS4-3126-SM-5A5LH 14.8
GTEX-PWO3-0926-SM-2I5EY 14.8
GTEX-11WQK-3026-SM-5EQL6 14.7
GTEX-11GSP-3226-SM-5986O 14.4
GTEX-131XW-3126-SM-5LZUC 13.5
GTEX-NPJ8-1526-SM-2D7VU 13.5
GTEX-11TTK-2926-SM-5PNYP 13.0
GTEX-13OW7-3026-SM-5L3GY 13.0
GTEX-1192X-3126-SM-5N9BY 12.9
GTEX-12WSA-2926-SM-5EQ4D 12.6
GTEX-13X6K-2926-SM-5Q5D5 12.4
GTEX-13G51-3026-SM-5IJB8 12.3
GTEX-12WSD-3126-SM-5HL7P 12.2
GTEX-QVUS-2826-SM-3GADB 12.2
GTEX-ZVT3-3026-SM-5E43N 12.1
GTEX-13S7M-3126-SM-5RQJQ 12.0
GTEX-N7MT-1126-SM-5SI7V 12.0
GTEX-1117F-3226-SM-5N9CT 11.9
GTEX-13FHO-3026-SM-5J1O9 11.7
GTEX-13QIC-2926-SM-5J2NF 11.4
GTEX-13PVQ-3026-SM-5SI93 11.3
GTEX-11GSO-2926-SM-5HL73 11.2
GTEX-11ONC-2926-SM-5P9JM 11.1
GTEX-1445S-3026-SM-5O9BR 10.8
GTEX-13OW8-2826-SM-5L3GC 10.7
GTEX-11EI6-3026-SM-5GZZO 10.6
GTEX-ZZPT-3026-SM-5GZXH 10.5
GTEX-139T8-1026-SM-5J2MC 10.3
GTEX-NPJ7-2726-SM-2I3FT 10.3
GTEX-13O3O-3126-SM-5KM3H 10.1
GTEX-14BMV-3026-SM-5S2PQ 10.1
GTEX-1128S-2726-SM-5H12C 10.0
GTEX-XLM4-3026-SM-4AT6L 10.0
GTEX-12ZZY-3026-SM-5GCOU 9.9
GTEX-145MG-3026-SM-5RQJA 9.9
GTEX-13PL6-3126-SM-5LUAR 9.8
GTEX-13OVH-3026-SM-5MR4N 9.7
GTEX-13JUV-2926-SM-5LZX7 9.6
GTEX-145LS-3126-SM-5Q5BY 9.6
GTEX-145MF-2726-SM-5O995 9.6
GTEX-YJ89-3026-SM-5IFJI 9.3
GTEX-12ZZZ-3026-SM-5BC67 9.1
GTEX-144FL-3026-SM-5O99C 9.1
GTEX-13NYS-3126-SM-5KLYV 9.0
GTEX-13NYB-3026-SM-5IJD7 8.7
GTEX-13FXS-3126-SM-5J2NN 8.6
GTEX-13OW6-3026-SM-5J2MI 8.5
GTEX-144GL-3026-SM-5Q5CW 8.5
GTEX-11DXY-3226-SM-5GIDE 8.4
GTEX-1399T-3026-SM-5KLZC 8.4
GTEX-13IVO-2926-SM-5L3CZ 8.4
GTEX-Y111-2726-SM-4TT3N 8.1
GTEX-Y8DK-0826-SM-4TT3T 8.1
GTEX-ZAK1-3026-SM-5S2MJ 8.1
GTEX-132Q8-3026-SM-5PNVG 8.0
GTEX-147GR-3026-SM-5S2ML 8.0
GTEX-14A5I-2926-SM-5Q5CQ 8.0
GTEX-111FC-3126-SM-5GZZ2 7.9
GTEX-11NUK-2926-SM-5A5MD 7.9
GTEX-QMR6-1426-SM-32PLA 7.9
GTEX-13O3Q-2926-SM-5KM45 7.8
GTEX-QVJO-1426-SM-2S1QY 7.8
GTEX-11DXW-1126-SM-5H12Q 7.7
GTEX-12ZZX-2926-SM-5GCOQ 7.6
GTEX-1313W-3126-SM-5LZUI 7.6
GTEX-131YS-3126-SM-5KLYT 7.5
GTEX-13FLW-1426-SM-5K7YE 7.5
GTEX-XOTO-3026-SM-4B65M 7.4
GTEX-11PRG-2926-SM-5987A 7.2
GTEX-11OC5-0726-SM-5P9JK 7.0
GTEX-13X6J-3026-SM-5Q5CU 7.0
GTEX-Q2AG-2926-SM-2HMJ3 7.0
GTEX-TSE9-3026-SM-3DB76 7.0
GTEX-WZTO-2926-SM-3NM9I 7.0
GTEX-X4XX-3026-SM-3NMB2 7.0
GTEX-14ASI-3026-SM-5S2PN 6.8
GTEX-WHSE-3026-SM-3P5ZH 6.8
GTEX-OXRN-2426-SM-2I5EQ 6.5
GTEX-12WSC-3026-SM-5GCNF 6.2
GTEX-ZYFD-3026-SM-5E44C 6.2
GTEX-11O72-2926-SM-5BC4V 6.1
GTEX-13SLX-3126-SM-5S2Q5 6.0
GTEX-12126-1026-SM-5P9JJ 5.9
GTEX-11NV4-2126-SM-5N9DS 5.8
GTEX-WVLH-3026-SM-3MJG9 5.8
GTEX-YFC4-3126-SM-5PNV6 5.8
GTEX-ZUA1-3026-SM-59HJC 5.7
GTEX-117XS-3026-SM-5N9CA 5.6
GTEX-145MH-3026-SM-5Q5DZ 5.6
GTEX-RNOR-2326-SM-2TF4I 5.3
GTEX-ZAJG-3126-SM-5HL9J 5.3
GTEX-R55F-1326-SM-5S2V4 5.1
GTEX-13FHP-3026-SM-5IJBS 5.0
GTEX-T6MN-2626-SM-32PMQ 4.9
GTEX-13VXU-2926-SM-5LU5C 4.7
GTEX-T5JC-2426-SM-3NMDB 4.7
GTEX-X585-3026-SM-46MWF 4.7
GTEX-12WSH-3026-SM-5CVNI 4.6
GTEX-11ZUS-2926-SM-5FQSL 4.4
GTEX-UTHO-3026-SM-3GAFB 4.2
GTEX-11OF3-2926-SM-5HL78 3.9
GTEX-Z93S-2926-SM-57WB9 3.7
GTEX-13NYC-2826-SM-5K7WR 3.5
GTEX-WL46-2926-SM-3LK82 3.4
GTEX-WWYW-3126-SM-3NB39 3.4
GTEX-T2IS-3026-SM-32QPM 2.8
GTEX-PVOW-2526-SM-2XCF7 2.1
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 8.5
Samples: 108

Max RPKM: 28.4
Min RPKM: 1.2
Std RPKM: 4.5
Median RPKM: 7.5
GTEX-11H98-0011-R10b-SM-5NQ98 28.4
GTEX-12WSD-0011-R10b-SM-5GU79 23.8
GTEX-13JVG-0011-R10b-SM-5KM2P 21.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 21.2
GTEX-1477Z-0011-R10b-SM-5S2RF 19.5
GTEX-12WSA-0011-R10b-SM-5P9ET 15.9
GTEX-131XW-0011-R10a-SM-5DUVA 15.8
GTEX-ZV68-0011-R10a-SM-51MT7 14.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 14.7
GTEX-XMD1-0011-R10A-SM-4AT4A 13.8
GTEX-13SLW-0011-R10a-SM-5S2UI 13.6
GTEX-13O3O-0011-R10a-SM-5LUA9 13.3
GTEX-12ZZW-0011-R10b-SM-5HL9X 13.1
GTEX-139TS-0011-R10a-SM-5K7TU 12.8
GTEX-11WQK-0011-R10a-SM-5BC6R 12.7
GTEX-1445S-0011-R10a-SM-5PNWB 12.7
GTEX-14753-0011-R10b-SM-5S2WE 12.7
GTEX-RVPU-0011-R10A-SM-2XCAH 12.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 12.5
GTEX-13X6K-0011-R10a-SM-5P9JR 12.4
GTEX-13FXS-0011-R10a-SM-5J2MA 12.3
GTEX-13FLV-0011-R10b-SM-5LZZ2 12.1
GTEX-13JUV-0011-R10b-SM-5LZXR 11.2
GTEX-13OW8-0011-R10a-SM-5L3H6 11.2
GTEX-TSE9-0011-R10A-SM-3DB7O 11.2
GTEX-X261-0011-R10B-SM-4E3JT 10.7
GTEX-13NYS-0011-R10a-SM-5MR4S 10.4
GTEX-NPJ8-0011-R10A-SM-2YUMO 10.3
GTEX-147F4-0011-R10b-SM-5S2WC 10.0
GTEX-ZAB4-0011-R10a-SM-4SOKH 10.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 9.5
GTEX-145LU-0011-R10a-SM-5PNWJ 9.5
GTEX-13CZV-0011-R10b-SM-5LZYD 9.3
GTEX-13X6I-0011-R10a-SM-5PNWI 9.2
GTEX-13OW7-0011-R10a-SM-5L3H3 9.0
GTEX-13FTZ-0011-R10b-SM-5KLZS 8.9
GTEX-14BIL-0011-R10a-SM-5SI75 8.9
GTEX-11WQC-0011-R10a-SM-57WCT 8.8
GTEX-13N1W-0011-R10b-SM-5MR4H 8.8
GTEX-N7MT-0011-R10A-SM-2I3E1 8.8
GTEX-ZUA1-0011-R10a-SM-51MT6 8.8
GTEX-ZVT3-0011-R10b-SM-57WB6 8.8
GTEX-13FHO-0011-R10b-SM-5J2MM 8.7
GTEX-P44H-0011-R10A-SM-2XCEK 8.7
GTEX-X4EP-0011-R10B-SM-4QASJ 8.7
GTEX-13QJC-0011-R10a-SM-5SI63 8.5
GTEX-147GR-0011-R10b-SM-5S2UM 8.5
GTEX-XLM4-0011-R10A-SM-4AT5P 8.5
GTEX-13OVL-0011-R10a-SM-5L3GS 8.4
GTEX-ZE7O-0011-R10a-SM-57WAZ 8.4
GTEX-13OW6-0011-R10a-SM-5L3HE 8.0
GTEX-QDT8-0011-R10A-SM-32PKG 7.7
GTEX-OXRO-0011-R10A-SM-2I5EH 7.5
GTEX-YJ89-0011-R10a-SM-4SOK9 7.5
GTEX-ZVZQ-0011-R10b-SM-51MRT 7.5
GTEX-13G51-0011-R10b-SM-5LZYF 7.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 7.4
GTEX-ZXG5-0011-R10a-SM-57WDD 7.3
GTEX-13FLW-0011-R10b-SM-5LZZF 7.2
GTEX-13NZA-0011-R10b-SM-5KM54 7.1
GTEX-13S7M-0011-R10b-SM-5PNZB 7.1
GTEX-14ASI-0011-R10b-SM-5S2VZ 7.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 6.9
GTEX-NL4W-0011-R10A-SM-2I3DY 6.9
GTEX-13QIC-0011-R10a-SM-5O9C7 6.6
GTEX-12WSM-0011-R10a-SM-5DUWV 6.5
GTEX-12ZZZ-0011-R10a-SM-5P9HC 6.5
GTEX-145LS-0011-R10a-SM-5PNUQ 6.4
GTEX-QVUS-0011-R10A-SM-3GIK3 6.4
GTEX-132Q8-0011-R10b-SM-5DUWZ 6.3
GTEX-145MG-0011-R10a-SM-5PNWG 6.3
GTEX-ZF28-0011-R10a-SM-4WWEH 6.2
GTEX-13N2G-0011-R10a-SM-5MR34 6.1
GTEX-QMR6-0011-R10A-SM-32PKO 6.1
GTEX-12ZZX-0011-R10b-SM-5DUWK 5.9
GTEX-131XH-0011-R10a-SM-5EGLJ 5.9
GTEX-13O3Q-0011-R10b-SM-5KM39 5.9
GTEX-Z93S-0011-R10a-SM-4RGNM 5.8
GTEX-131YS-0011-R10b-SM-5EQ5N 5.5
GTEX-13SLX-0011-R10a-SM-5P9HV 5.5
GTEX-13IVO-0011-R10a-SM-5LZY3 5.4
GTEX-OXRN-0011-R10A-SM-2I5GC 5.4
GTEX-12126-0011-R10b-SM-5BC6T 5.3
GTEX-13NYB-0011-R10a-SM-5KM43 5.3
GTEX-14BIN-0011-R10a-SM-5S2UA 5.3
GTEX-YFC4-0011-R10a-SM-4SOK5 5.3
GTEX-12WSF-0011-R10a-SM-5LZVH 5.1
GTEX-11ZUS-0011-R10b-SM-5BC79 5.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 4.9
GTEX-X4XX-0011-R10B-SM-46MWO 4.8
GTEX-Y8DK-0011-R10A-SM-4SOK1 4.7
GTEX-13X6J-0011-R10b-SM-5PNWA 4.6
GTEX-WVLH-0011-R10A-SM-3MJFM 4.6
GTEX-WZTO-0011-R10B-SM-4E3KB 4.6
GTEX-S7SE-0011-R10A-SM-2XCDF 4.5
GTEX-Q2AG-0011-R10A-SM-2HMLA 4.4
GTEX-N7MS-0011-R10A-SM-2HMJK 4.0
GTEX-12WSH-0011-R10a-SM-5LZUS 3.8
GTEX-T5JC-0011-R10A-SM-32PM2 3.8
GTEX-12WSC-0011-R10a-SM-5GU57 3.6
GTEX-WWYW-0011-R10A-SM-3NB35 3.3
GTEX-12WSE-0011-R10b-SM-5P9JV 3.1
GTEX-X585-0011-R10A-SM-46MUY 3.1
GTEX-1313W-0011-R10b-SM-5DUXA 2.8
GTEX-T6MN-0011-R10A-SM-32QP7 2.8
GTEX-145MH-0011-R10b-SM-5PNUK 2.7
GTEX-NL3H-0011-R10A-SM-2I3E9 1.4
GTEX-WL46-0011-R10A-SM-3MJFQ 1.2
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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