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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:40.3TPM
GTEx:20.8RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:Low
Neuronal cells:Medium
Neuropil:Medium
 

Antibody staining

Antibody HPA031550

 

Antibody HPA031551

 

Antibody HPA031552

 

Endothelial cells

Low   Medium   Low  

Glial cells

Low   Low   Low  

Neuronal cells

Not detected   Medium   Medium  

Neuropil

Low   Medium   Medium  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

40.3

N/A Male, age 5
Sample 1
TPM: 45.8
overview Female, age 40
Sample 2
TPM: 32.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 42.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

20.8

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 16.9
Samples: 114

Max RPKM: 25
Min RPKM: 8
Std RPKM: 4
Median RPKM: 17.1
GTEX-PVOW-2526-SM-2XCF7 25.0
GTEX-14BMV-3026-SM-5S2PQ 24.1
GTEX-T2IS-3026-SM-32QPM 23.9
GTEX-Y8DK-0826-SM-4TT3T 23.7
GTEX-WVLH-3026-SM-3MJG9 23.4
GTEX-ZAK1-3026-SM-5S2MJ 23.1
GTEX-11DXY-3226-SM-5GIDE 23.0
GTEX-145LS-3126-SM-5Q5BY 23.0
GTEX-WZTO-2926-SM-3NM9I 22.2
GTEX-117XS-3026-SM-5N9CA 22.0
GTEX-131YS-3126-SM-5KLYT 22.0
GTEX-UTHO-3026-SM-3GAFB 22.0
GTEX-XLM4-3026-SM-4AT6L 22.0
GTEX-T5JC-2426-SM-3NMDB 21.9
GTEX-145MG-3026-SM-5RQJA 21.8
GTEX-X585-3026-SM-46MWF 21.7
GTEX-WL46-2926-SM-3LK82 21.3
GTEX-12ZZZ-3026-SM-5BC67 21.2
GTEX-11ZUS-2926-SM-5FQSL 21.1
GTEX-145MH-3026-SM-5Q5DZ 21.1
GTEX-13VXU-2926-SM-5LU5C 20.6
GTEX-X4XX-3026-SM-3NMB2 20.6
GTEX-13NYC-2826-SM-5K7WR 20.5
GTEX-14ASI-3026-SM-5S2PN 20.5
GTEX-WWYW-3126-SM-3NB39 20.2
GTEX-11NUK-2926-SM-5A5MD 20.1
GTEX-13FLW-1426-SM-5K7YE 20.1
GTEX-13SLX-3126-SM-5S2Q5 20.1
GTEX-WHSE-3026-SM-3P5ZH 20.0
GTEX-ZVT3-3026-SM-5E43N 19.9
GTEX-1399T-3026-SM-5KLZC 19.8
GTEX-TSE9-3026-SM-3DB76 19.8
GTEX-13PL6-3126-SM-5LUAR 19.7
GTEX-13O3O-3126-SM-5KM3H 19.5
GTEX-ZUA1-3026-SM-59HJC 19.5
GTEX-12WSC-3026-SM-5GCNF 19.3
GTEX-13OVH-3026-SM-5MR4N 19.3
GTEX-QMR6-1426-SM-32PLA 19.0
GTEX-111FC-3126-SM-5GZZ2 18.9
GTEX-11PRG-2926-SM-5987A 18.8
GTEX-11O72-2926-SM-5BC4V 18.7
GTEX-1313W-3126-SM-5LZUI 18.7
GTEX-YFC4-3126-SM-5PNV6 18.6
GTEX-13OW6-3026-SM-5J2MI 18.5
GTEX-13FXS-3126-SM-5J2NN 18.3
GTEX-XOTO-3026-SM-4B65M 18.1
GTEX-12ZZX-2926-SM-5GCOQ 18.0
GTEX-132Q8-3026-SM-5PNVG 18.0
GTEX-13FHO-3026-SM-5J1O9 18.0
GTEX-Z93S-2926-SM-57WB9 18.0
GTEX-12126-1026-SM-5P9JJ 17.9
GTEX-12WSH-3026-SM-5CVNI 17.9
GTEX-14A5I-2926-SM-5Q5CQ 17.7
GTEX-13OW8-2826-SM-5L3GC 17.6
GTEX-RNOR-2326-SM-2TF4I 17.5
GTEX-T6MN-2626-SM-32PMQ 17.3
GTEX-RU72-3026-SM-5SI7Y 17.1
GTEX-13O3Q-2926-SM-5KM45 17.0
GTEX-QVUS-2826-SM-3GADB 16.9
GTEX-13QIC-2926-SM-5J2NF 16.6
GTEX-144GL-3026-SM-5Q5CW 16.5
GTEX-11GSO-2926-SM-5HL73 16.4
GTEX-11ONC-2926-SM-5P9JM 16.4
GTEX-QVJO-1426-SM-2S1QY 16.4
GTEX-11DXW-1126-SM-5H12Q 16.3
GTEX-ZYFD-3026-SM-5E44C 16.3
GTEX-1128S-2726-SM-5H12C 16.2
GTEX-1192X-3126-SM-5N9BY 16.2
GTEX-13X6J-3026-SM-5Q5CU 16.2
GTEX-YJ89-3026-SM-5IFJI 16.2
GTEX-13NYB-3026-SM-5IJD7 16.0
GTEX-13FHP-3026-SM-5IJBS 15.8
GTEX-R55F-1326-SM-5S2V4 15.6
GTEX-13NYS-3126-SM-5KLYV 15.3
GTEX-11OC5-0726-SM-5P9JK 15.2
GTEX-13G51-3026-SM-5IJB8 15.1
GTEX-12ZZY-3026-SM-5GCOU 14.8
GTEX-OXRN-2426-SM-2I5EQ 14.7
GTEX-ZE7O-3126-SM-5HL5X 14.7
GTEX-139T8-1026-SM-5J2MC 14.6
GTEX-11EI6-3026-SM-5GZZO 14.5
GTEX-13S7M-3126-SM-5RQJQ 14.3
GTEX-12ZZW-2926-SM-5LZUP 14.2
GTEX-Y111-2726-SM-4TT3N 14.0
GTEX-13PVQ-3026-SM-5SI93 13.8
GTEX-13JVG-3126-SM-5L3FH 13.7
GTEX-QDT8-2926-SM-32PKC 13.6
GTEX-ZAJG-3126-SM-5HL9J 13.6
GTEX-145MF-2726-SM-5O995 13.5
GTEX-N7MT-1126-SM-5SI7V 13.4
GTEX-ZZPT-3026-SM-5GZXH 13.4
GTEX-13OVJ-2826-SM-5L3GW 13.3
GTEX-11EMC-3226-SM-5EGKW 13.2
GTEX-11GS4-3126-SM-5A5LH 13.2
GTEX-13OW7-3026-SM-5L3GY 13.0
GTEX-131XW-3126-SM-5LZUC 12.9
GTEX-12WSD-3126-SM-5HL7P 12.2
GTEX-13IVO-2926-SM-5L3CZ 12.2
GTEX-13X6K-2926-SM-5Q5D5 12.2
GTEX-NPJ7-2726-SM-2I3FT 11.7
GTEX-Q2AG-2926-SM-2HMJ3 11.4
GTEX-11WQK-3026-SM-5EQL6 11.2
GTEX-11TTK-2926-SM-5PNYP 11.1
GTEX-144FL-3026-SM-5O99C 10.6
GTEX-1117F-3226-SM-5N9CT 10.3
GTEX-NPJ8-1526-SM-2D7VU 10.3
GTEX-11GSP-3226-SM-5986O 10.2
GTEX-11NV4-2126-SM-5N9DS 10.2
GTEX-11OF3-2926-SM-5HL78 9.8
GTEX-12WSA-2926-SM-5EQ4D 9.8
GTEX-PWO3-0926-SM-2I5EY 9.8
GTEX-13JUV-2926-SM-5LZX7 8.8
GTEX-147GR-3026-SM-5S2ML 8.1
GTEX-1445S-3026-SM-5O9BR 8.0
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 24.9
Samples: 108

Max RPKM: 37.7
Min RPKM: 9.5
Std RPKM: 7
Median RPKM: 25.7
GTEX-Y8DK-0011-R10A-SM-4SOK1 37.7
GTEX-12ZZY-0011-R10b-SM-5HL7W 37.4
GTEX-12WSC-0011-R10a-SM-5GU57 37.2
GTEX-14BIN-0011-R10a-SM-5S2UA 35.8
GTEX-13RTJ-0011-R10b-SM-5O9CW 35.7
GTEX-WWYW-0011-R10A-SM-3NB35 35.6
GTEX-WVLH-0011-R10A-SM-3MJFM 35.5
GTEX-145MG-0011-R10a-SM-5PNWG 35.2
GTEX-14ASI-0011-R10b-SM-5S2VZ 34.5
GTEX-WL46-0011-R10A-SM-3MJFQ 34.5
GTEX-1313W-0011-R10b-SM-5DUXA 33.5
GTEX-13SLX-0011-R10a-SM-5P9HV 33.5
GTEX-T6MN-0011-R10A-SM-32QP7 33.5
GTEX-13O3Q-0011-R10b-SM-5KM39 32.9
GTEX-145MH-0011-R10b-SM-5PNUK 32.0
GTEX-X585-0011-R10A-SM-46MUY 31.5
GTEX-13S7M-0011-R10b-SM-5PNZB 31.4
GTEX-12WSH-0011-R10a-SM-5LZUS 31.2
GTEX-13N1W-0011-R10b-SM-5MR4H 31.0
GTEX-14BIL-0011-R10a-SM-5SI75 30.9
GTEX-12WSE-0011-R10b-SM-5P9JV 30.7
GTEX-QMR6-0011-R10A-SM-32PKO 30.7
GTEX-YFC4-0011-R10a-SM-4SOK5 30.7
GTEX-12WSF-0011-R10a-SM-5LZVH 30.4
GTEX-13O3O-0011-R10a-SM-5LUA9 30.4
GTEX-13CZV-0011-R10b-SM-5LZYD 30.3
GTEX-145LS-0011-R10a-SM-5PNUQ 30.1
GTEX-13QIC-0011-R10a-SM-5O9C7 29.9
GTEX-131YS-0011-R10b-SM-5EQ5N 29.8
GTEX-QVJO-0011-R10A-SM-2S1QJ 29.7
GTEX-12ZZX-0011-R10b-SM-5DUWK 29.6
GTEX-S7SE-0011-R10A-SM-2XCDF 29.6
GTEX-13X6I-0011-R10a-SM-5PNWI 29.4
GTEX-13X6J-0011-R10b-SM-5PNWA 29.0
GTEX-WZTO-0011-R10B-SM-4E3KB 28.9
GTEX-X4XX-0011-R10B-SM-46MWO 28.9
GTEX-YJ89-0011-R10a-SM-4SOK9 28.6
GTEX-13OW7-0011-R10a-SM-5L3H3 28.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 28.3
GTEX-QDT8-0011-R10A-SM-32PKG 28.2
GTEX-N7MT-0011-R10A-SM-2I3E1 28.0
GTEX-QVUS-0011-R10A-SM-3GIK3 27.6
GTEX-XLM4-0011-R10A-SM-4AT5P 27.6
GTEX-131XH-0011-R10a-SM-5EGLJ 27.4
GTEX-X4EP-0011-R10B-SM-4QASJ 27.4
GTEX-13NYB-0011-R10a-SM-5KM43 27.3
GTEX-T5JC-0011-R10A-SM-32PM2 27.3
GTEX-13X6K-0011-R10a-SM-5P9JR 27.2
GTEX-NL3H-0011-R10A-SM-2I3E9 27.2
GTEX-13FLW-0011-R10b-SM-5LZZF 27.1
GTEX-11H98-0011-R10b-SM-5NQ98 26.8
GTEX-147GR-0011-R10b-SM-5S2UM 26.8
GTEX-12ZZZ-0011-R10a-SM-5P9HC 26.7
GTEX-NPJ7-0011-R10A-SM-2I3E5 26.0
GTEX-13FXS-0011-R10a-SM-5J2MA 25.4
GTEX-132Q8-0011-R10b-SM-5DUWZ 25.1
GTEX-P44H-0011-R10A-SM-2XCEK 25.1
GTEX-ZAB4-0011-R10a-SM-4SOKH 25.0
GTEX-13FHO-0011-R10b-SM-5J2MM 24.8
GTEX-13NYS-0011-R10a-SM-5MR4S 24.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 24.7
GTEX-ZUA1-0011-R10a-SM-51MT6 24.5
GTEX-Q2AG-0011-R10A-SM-2HMLA 24.3
GTEX-145LU-0011-R10a-SM-5PNWJ 24.2
GTEX-ZF28-0011-R10a-SM-4WWEH 24.2
GTEX-12WSM-0011-R10a-SM-5DUWV 24.1
GTEX-ZDXO-0011-R10a-SM-4WWD8 23.7
GTEX-N7MS-0011-R10A-SM-2HMJK 23.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 23.3
GTEX-12126-0011-R10b-SM-5BC6T 23.2
GTEX-OXRN-0011-R10A-SM-2I5GC 23.1
GTEX-ZVT3-0011-R10b-SM-57WB6 23.1
GTEX-13OVL-0011-R10a-SM-5L3GS 23.0
GTEX-Z93S-0011-R10a-SM-4RGNM 22.8
GTEX-13OW6-0011-R10a-SM-5L3HE 22.6
GTEX-12WSD-0011-R10b-SM-5GU79 21.9
GTEX-13QJC-0011-R10a-SM-5SI63 21.4
GTEX-13G51-0011-R10b-SM-5LZYF 21.3
GTEX-13FLV-0011-R10b-SM-5LZZ2 21.0
GTEX-13OW8-0011-R10a-SM-5L3H6 20.8
GTEX-147F4-0011-R10b-SM-5S2WC 20.7
GTEX-TSE9-0011-R10A-SM-3DB7O 20.2
GTEX-11ZUS-0011-R10b-SM-5BC79 19.9
GTEX-RVPU-0011-R10A-SM-2XCAH 19.4
GTEX-13SLW-0011-R10a-SM-5S2UI 19.3
GTEX-13N2G-0011-R10a-SM-5MR34 18.5
GTEX-12ZZW-0011-R10b-SM-5HL9X 17.8
GTEX-139TS-0011-R10a-SM-5K7TU 17.3
GTEX-13JUV-0011-R10b-SM-5LZXR 16.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 16.2
GTEX-XMD1-0011-R10A-SM-4AT4A 15.9
GTEX-11WQC-0011-R10a-SM-57WCT 15.7
GTEX-X261-0011-R10B-SM-4E3JT 15.5
GTEX-OXRO-0011-R10A-SM-2I5EH 15.2
GTEX-11GSP-0011-R10a-SM-5NQ7J 15.1
GTEX-12WSA-0011-R10b-SM-5P9ET 15.0
GTEX-NL4W-0011-R10A-SM-2I3DY 14.9
GTEX-13NZA-0011-R10b-SM-5KM54 14.4
GTEX-ZXG5-0011-R10a-SM-57WDD 13.8
GTEX-ZE7O-0011-R10a-SM-57WAZ 13.2
GTEX-13JVG-0011-R10b-SM-5KM2P 12.9
GTEX-11WQK-0011-R10a-SM-5BC6R 12.6
GTEX-1445S-0011-R10a-SM-5PNWB 11.1
GTEX-14753-0011-R10b-SM-5S2WE 11.0
GTEX-1477Z-0011-R10b-SM-5S2RF 10.9
GTEX-13IVO-0011-R10a-SM-5LZY3 10.3
GTEX-ZV68-0011-R10a-SM-51MT7 9.6
GTEX-131XW-0011-R10a-SM-5DUVA 9.5
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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