Cell atlas - GDPD2 - The Human Protein Atlas

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GDPD2

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	GDPD2
Gene description	Glycerophosphodiester phosphodiesterase domain containing 2
Protein class	Enzymes Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	4
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Group enriched (NTERA-2, AF22)
Protein evidence	Evidence at transcript level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Group enriched (NTERA-2, AF22) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	GDPD2 (HGNC Symbol)
Synonyms	FLJ20207, GDE3, OBDPF
Description	Glycerophosphodiester phosphodiesterase domain containing 2 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the glycerophosphodiester phosphodiesterase enzyme family. The encoded protein hydrolyzes glycerophosphoinositol to produce inositol 1-phosphate and glycerol. This protein may have a role in osteoblast differentiation and growth. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jan 2010]
Chromosome	X
Cytoband	q13.1
Chromosome location (bp)	70423031 - 70433390
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000130055 (version 83.38)
Entrez gene	54857
UniProt	Q9HCC8 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9HCC8
Antibodypedia	GDPD2 antibodies

PROTEIN BROWSER

GDPD2-001	GDPD2-201	GDPD2-202	GDPD2-203

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
GDPD2-001 ENSP00000363503 ENST00000374382	Q9HCC8 [Direct mapping] Glycerophosphoinositol inositolphosphodiesterase GDPD2 Show all	Enzymes ENZYME proteins Hydrolases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 6TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0005856 [cytoskeleton] GO:0005886 [plasma membrane] GO:0006629 [lipid metabolic process] GO:0008081 [phosphoric diester hydrolase activity] GO:0008889 [glycerophosphodiester phosphodiesterase activity] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] GO:0047394 [glycerophosphoinositol inositolphosphodiesterase activity] Show all	539 aa 61.7 kDa	No	6
GDPD2-201 ENSP00000414019 ENST00000453994	Q9HCC8 [Direct mapping] Glycerophosphoinositol inositolphosphodiesterase GDPD2 Show all	Enzymes ENZYME proteins Hydrolases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 6TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0005856 [cytoskeleton] GO:0005886 [plasma membrane] GO:0006629 [lipid metabolic process] GO:0008081 [phosphoric diester hydrolase activity] GO:0008889 [glycerophosphodiester phosphodiesterase activity] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] GO:0047394 [glycerophosphoinositol inositolphosphodiesterase activity] Show all	590 aa 67 kDa	No	6
GDPD2-202 ENSP00000445982 ENST00000536730	Q9HCC8 [Direct mapping] Glycerophosphoinositol inositolphosphodiesterase GDPD2 Show all	Enzymes ENZYME proteins Hydrolases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 5TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0005856 [cytoskeleton] GO:0005886 [plasma membrane] GO:0006629 [lipid metabolic process] GO:0008081 [phosphoric diester hydrolase activity] GO:0008889 [glycerophosphodiester phosphodiesterase activity] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] GO:0047394 [glycerophosphoinositol inositolphosphodiesterase activity] Show all	460 aa 52.2 kDa	No	5
GDPD2-203 ENSP00000444601 ENST00000538649	Q9HCC8 [Direct mapping] Glycerophosphoinositol inositolphosphodiesterase GDPD2 Show all	Enzymes ENZYME proteins Hydrolases Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 5TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0005856 [cytoskeleton] GO:0005886 [plasma membrane] GO:0006629 [lipid metabolic process] GO:0008081 [phosphoric diester hydrolase activity] GO:0008889 [glycerophosphodiester phosphodiesterase activity] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] GO:0047394 [glycerophosphoinositol inositolphosphodiesterase activity] Show all	460 aa 52.2 kDa	No	5

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.