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IMMT

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:57.2TPM
GTEx:29.0RPKM
FANTOM5:86.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA036164

  

Antibody HPA036165

  

Antibody CAB022439

  

Endothelial cells

 Low   Not detected   Low  

Glandular cells

 Medium   Low   High  

Peripheral nerve/ganglion

 Not detected   Low   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

57.2
overview Male, age 54
Sample 1
TPM: 47.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 43.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 50.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 59.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 32.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 62.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 75.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 58.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 60.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 74.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 69.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 61.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 46.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

29.0

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 24.1
Samples: 149

Max RPKM: 33.2
Min RPKM: 13.4
Std RPKM: 3.9
Median RPKM: 24.3
GTEX-11TT1-0926-SM-5GU5M 33.2
GTEX-1399U-2226-SM-5KLZI 31.9
GTEX-14E6E-1726-SM-5S2R6 31.9
GTEX-145ME-1126-SM-5SIAT 31.8
GTEX-131XG-1526-SM-5GCNQ 31.6
GTEX-ZVT2-1726-SM-51MRO 31.3
GTEX-ZTSS-1226-SM-51MSZ 31.1
GTEX-XBED-1726-SM-47JYO 30.8
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 32.8
Samples: 196

Max RPKM: 50.6
Min RPKM: 7
Std RPKM: 8.3
Median RPKM: 32.7
GTEX-131XG-1826-SM-5LZV4 50.6
GTEX-U4B1-1126-SM-4DXV3 50.3
GTEX-YF7O-1726-SM-5IFJ9 49.7
GTEX-U3ZN-2126-SM-4DXU1 48.7
GTEX-O5YT-1426-SM-3MJHC 48.6
GTEX-P4QT-1426-SM-3NMCX 47.8
GTEX-Y5LM-1526-SM-4VDTA 47.8
GTEX-111CU-1426-SM-5GZYP 47.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

86.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 86.1
FF:10014-101C5 62,83,84 years, mixed 86.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.