We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
REEP2
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:40.2RPKM
FANTOM5:100.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA031813

 

Glial cells

Not detected  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

40.2

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 40.2
Samples: 117

Max RPKM: 65
Min RPKM: 13.1
Std RPKM: 11.5
Median RPKM: 42
GTEX-X585-0011-R5A-SM-46MVI 65.0
GTEX-T6MN-0011-R5A-SM-32QPD 63.8
GTEX-13G51-0011-R5a-SM-5L3EB 61.8
GTEX-ZUA1-0011-R5b-SM-51MTG 61.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 61.0
GTEX-139TT-0011-R5b-SM-5K7W8 59.8
GTEX-T5JC-0011-R5A-SM-32PLK 57.6
GTEX-1399T-0011-R5b-SM-5IJDK 57.4
GTEX-13NYB-0011-R5a-SM-5MR45 57.2
GTEX-12WSC-0011-R5b-SM-5CVNS 55.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 55.6
GTEX-145MH-0011-R5a-SM-5P9JT 55.2
GTEX-13FXS-0011-R5b-SM-5LZYE 54.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 54.2
GTEX-WL46-0011-R5A-SM-3LK6V 52.9
GTEX-13JUV-0011-R5a-SM-5LZY5 52.6
GTEX-13SLX-0011-R5a-SM-5O9BV 52.6
GTEX-13X6J-0011-R5b-SM-5PNWT 52.3
GTEX-13VXU-0011-R5a-SM-5O9D7 51.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 51.7
GTEX-QVJO-0011-R5A-SM-2S1QM 51.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 50.7
GTEX-WZTO-0011-R5B-SM-3NMC5 50.5
GTEX-14ABY-0011-R5b-SM-5SI7B 49.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 49.3
GTEX-13FLW-0011-R5a-SM-5LZX6 48.9
GTEX-131YS-0011-R5b-SM-5K7YB 48.6
GTEX-13OW6-0011-R5a-SM-5O9BK 48.5
GTEX-13S7M-0011-R5b-SM-5P9HS 48.5
GTEX-11OF3-0011-R5a-SM-57WB4 47.9
GTEX-14BIM-0011-R5b-SM-5S2RM 47.4
GTEX-13OVL-0011-R5b-SM-5L3FU 46.7
GTEX-RU72-0011-R5A-SM-2TF6U 46.7
GTEX-WVLH-0011-R5A-SM-3MJFW 46.6
GTEX-13X6K-0011-R5b-SM-5PNUE 46.5
GTEX-S7SE-0011-R5A-SM-2XCDA 46.3
GTEX-11NV4-0011-R5a-SM-5NQ88 46.1
GTEX-Z93S-0011-R5b-SM-4RGNI 45.8
GTEX-N7MS-0011-R5a-SM-2HMK8 45.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 45.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 45.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 45.3
GTEX-TSE9-0011-R5A-SM-3DB7J 45.2
GTEX-145LS-0011-R5a-SM-5SI65 45.0
GTEX-139T8-0011-R5b-SM-5J1MO 44.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 44.9
GTEX-13O3O-0011-R5b-SM-5KM44 44.5
GTEX-13FLV-0011-R5a-SM-5LZWT 44.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 44.3
GTEX-UTHO-0011-R5A-SM-3GIJD 44.2
GTEX-11H98-0011-R5b-SM-57WCF 44.1
GTEX-P44H-0011-R5A-SM-2XCEX 44.0
GTEX-13OVH-0011-R5b-SM-5KM4L 43.6
GTEX-11GSP-0011-R5a-SM-57WBE 43.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 43.5
GTEX-1313W-0011-R5b-SM-5L3EP 42.8
GTEX-132Q8-0011-R5a-SM-5IJDM 42.8
GTEX-13X6I-0011-R5a-SM-5PNWW 42.3
GTEX-12WSF-0011-R5a-SM-5HL8K 42.0
GTEX-RVPV-0011-R5A-SM-2TF69 41.2
GTEX-13OW7-0011-R5b-SM-5O9DM 41.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 40.8
GTEX-OHPN-0011-R5A-SM-2I5FF 40.8
GTEX-13NYS-0011-R5a-SM-5MR4D 40.1
GTEX-12ZZX-0011-R5a-SM-5HL89 39.6
GTEX-R55E-0011-R5A-SM-2TC5N 39.5
GTEX-13CZV-0011-R5a-SM-5K7XA 39.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 38.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 38.9
GTEX-13OW5-0011-R5b-SM-5L3FR 38.5
GTEX-12WSH-0011-R5b-SM-5P9F3 38.1
GTEX-WWYW-0011-R5A-SM-3NB3E 38.1
GTEX-NL4W-0011-R5a-SM-2I3GD 37.9
GTEX-N7MT-0011-R5a-SM-2I3G6 37.3
GTEX-12WSD-0011-R5b-SM-5CVNG 36.5
GTEX-ZE7O-0011-R5a-SM-57WBO 36.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 36.2
GTEX-12WSB-0011-R5b-SM-5GU67 35.8
GTEX-RVPU-0011-R5A-SM-2XCAD 35.6
GTEX-XOTO-0011-R5A-SM-4B657 33.9
GTEX-YFC4-0011-R5a-SM-4RGLR 33.9
GTEX-14BIN-0011-R5b-SM-5SI78 33.6
GTEX-144GL-0011-R5b-SM-5PNUJ 33.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 33.0
GTEX-YJ89-0011-R5a-SM-4V6GM 32.3
GTEX-T2IS-0011-R5A-SM-32QP4 31.9
GTEX-ZXG5-0011-R5b-SM-57WBN 31.8
GTEX-NPJ7-0011-R5a-SM-33HBK 31.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 31.1
GTEX-12WSA-0011-R5b-SM-5GU5I 31.0
GTEX-PVOW-0011-R5A-SM-32PL7 29.8
GTEX-144GO-0011-R5a-SM-5PNUR 29.7
GTEX-NL3H-0011-R5a-SM-2I3GB 29.7
GTEX-13JVG-0011-R5a-SM-5MR4O 29.6
GTEX-X4XX-0011-R5A-SM-46MWN 29.1
GTEX-XMD1-0011-R5A-SM-4AT47 29.1
GTEX-13CIG-0011-R5b-SM-5L3F2 28.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 28.7
GTEX-X261-0011-R5A-SM-3NMB4 28.3
GTEX-QMR6-0011-R5A-SM-32PKT 26.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 26.2
GTEX-OXRN-0011-R5A-SM-2I5EF 25.2
GTEX-13112-0011-R5b-SM-5DUV8 25.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 24.9
GTEX-13FHP-0011-R5b-SM-5LZY2 24.6
GTEX-11WQC-0011-R5a-SM-5BC74 24.2
GTEX-139TS-0011-R5b-SM-5J2MZ 23.8
GTEX-ZV68-0011-R5a-SM-4YCDW 23.0
GTEX-1445S-0011-R5a-SM-5PNUS 20.0
GTEX-1477Z-0011-R5b-SM-5PNUO 19.7
GTEX-11UD1-0011-R5b-SM-5P9FP 19.2
GTEX-S7PM-0011-R5A-SM-3NM8G 18.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 18.6
GTEX-ZVT3-0011-R5a-SM-51MSI 18.6
GTEX-13CF2-0011-R5a-SM-5LZWS 18.2
GTEX-145MG-0011-R5b-SM-5S2VU 17.5
GTEX-13NZA-0011-R5b-SM-5KM4K 13.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

100.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 100.1
FF:10164-103B2 76 years, female 100.8
FF:10379-105H1 89 years, female 99.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.