We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
VPS4A
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SPLEEN

GENE/PROTEIN

Antibody validation


Dictionary

Spleen

Tissue proteome

Spleen

SPLEEN - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:14.0TPM
GTEx:49.3RPKM
FANTOM5:88.7Tags Per Million

SPLEEN - Annotated protein expression

Annotated protein
expression

Cells in red pulp:Low
Cells in white pulp:Medium
 

Antibody staining

Antibody CAB018751

 

Antibody CAB034411

 

Cells in red pulp

Medium   Low  

Cells in white pulp

Not detected   Medium  
   
   
   

SPLEEN - HPA RNA-seq

Average TPM

14.0

overview Female, age 60
Sample 1
TPM: 13.4
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Male, age 17
Sample 2
TPM: 15.4
Cell types%
Lymphocytes: 40
Macrophages: 35
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 5
overview Male, age 20
Sample 3
TPM: 13.2
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Female, age 19
Sample 4
TPM: 15.7
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 65
Sample 5
TPM: 12.3
Cell types%
Lymphocytes: 35
Macrophages: 30
Endothelial cells: 20
Fibroblasts: 10
Other cell types: 5

SPLEEN - GTEx RNA-seq

Average RPKM

49.3

GTEx sample id

RPKM

 

Spleen

Spleen
RPKM: 49.3
Samples: 104

Max RPKM: 63.7
Min RPKM: 34.1
Std RPKM: 5.9
Median RPKM: 49.4
GTEX-12WSJ-0526-SM-5GCOZ 63.7
GTEX-12WSG-0926-SM-5EGIH 63.4
GTEX-ZPU1-1026-SM-4YCEQ 61.2
GTEX-QLQW-0126-SM-447BK 60.1
GTEX-O5YT-0926-SM-48TDG 58.6
GTEX-XQ8I-1726-SM-4BOQB 58.1
GTEX-QCQG-0226-SM-48U28 57.3
GTEX-U4B1-0526-SM-4DXTK 57.1
GTEX-XUJ4-0226-SM-4BOP8 57.0
GTEX-X4LF-0226-SM-4QAS8 56.5
GTEX-QMRM-0226-SM-4R1K7 56.4
GTEX-P4QS-0926-SM-48TBS 56.0
GTEX-QV31-0126-SM-447BP 55.6
GTEX-Y114-0726-SM-4TT6U 55.4
GTEX-YB5K-1926-SM-4VDT4 55.1
GTEX-12BJ1-0726-SM-5EGGF 55.0
GTEX-S3XE-0626-SM-4AD6B 55.0
GTEX-132QS-0226-SM-5IFFZ 54.9
GTEX-U3ZH-0126-SM-4DXUK 54.8
GTEX-ZV6S-0826-SM-5NQ6Z 54.5
GTEX-ZVP2-0526-SM-51MSC 54.5
GTEX-146FQ-0626-SM-5LU9U 54.3
GTEX-QDVN-0526-SM-48TZ4 54.3
GTEX-POMQ-0126-SM-48TD6 54.2
GTEX-147F3-0126-SM-5NQBJ 53.7
GTEX-ZLFU-0526-SM-4WWBN 53.4
GTEX-XGQ4-0126-SM-4AT4H 53.2
GTEX-XMK1-0126-SM-4B65F 53.2
GTEX-XXEK-0126-SM-4BRVU 53.1
GTEX-ZDTT-1026-SM-5KM19 53.1
GTEX-13N11-0126-SM-5KM2Z 53.0
GTEX-WFON-0126-SM-4LVM9 52.9
GTEX-YEC4-0126-SM-4W21T 52.6
GTEX-ZYFG-0726-SM-5GIDX 52.4
GTEX-UPK5-1626-SM-4JBHI 52.3
GTEX-OIZH-0926-SM-48TBR 52.1
GTEX-U3ZN-0126-SM-4DXUM 51.9
GTEX-ZVZP-0726-SM-59HKA 51.8
GTEX-11NSD-0426-SM-5N9CR 51.7
GTEX-RUSQ-0126-SM-47JWV 51.7
GTEX-1122O-0526-SM-5N9DM 51.5
GTEX-OOBJ-0926-SM-48TDO 51.4
GTEX-T5JW-0126-SM-4DM6K 51.3
GTEX-14DAR-0326-SM-5S2PS 51.1
GTEX-Y5LM-0326-SM-4VBRN 51.0
GTEX-X3Y1-0126-SM-4PQZA 50.8
GTEX-131XG-0426-SM-5IFGD 50.7
GTEX-PX3G-0926-SM-48U12 50.4
GTEX-131XE-1126-SM-5EGHW 50.0
GTEX-S4Z8-0226-SM-4AD5K 49.9
GTEX-13CF3-0226-SM-5J1NW 49.5
GTEX-13X6H-0726-SM-5Q5BX 49.4
GTEX-VJYA-0126-SM-4KL1P 49.4
GTEX-144GN-2126-SM-5O99D 49.3
GTEX-Q2AH-0226-SM-48U1I 49.3
GTEX-11XUK-0426-SM-5EQML 49.2
GTEX-YFCO-0926-SM-5LUA5 49.1
GTEX-YB5E-0426-SM-5IFHR 48.8
GTEX-Z9EW-0726-SM-5HL9H 48.8
GTEX-X585-1826-SM-4QAS3 48.6
GTEX-117YX-2126-SM-5GIEL 47.7
GTEX-11DXX-0726-SM-5H12X 47.6
GTEX-11VI4-0126-SM-5GU6Z 47.0
GTEX-1399S-0226-SM-5IFFG 46.9
GTEX-R55G-0226-SM-48FEI 46.9
GTEX-145MN-0126-SM-5RQHY 46.8
GTEX-12WSN-0126-SM-5DUX5 46.7
GTEX-146FR-1926-SM-5NQA6 46.6
GTEX-WHWD-0126-SM-4OORS 46.6
GTEX-Y3I4-0126-SM-4TT26 46.6
GTEX-ZP4G-0326-SM-4YCEF 46.4
GTEX-11P81-1326-SM-5GU5S 46.3
GTEX-12WSK-0126-SM-5GCO7 46.2
GTEX-ZYWO-0226-SM-5GZX3 46.2
GTEX-11LCK-0126-SM-5A5M5 46.1
GTEX-13111-0126-SM-5EGHO 46.1
GTEX-13VXT-1326-SM-5LU3Y 46.0
GTEX-XPVG-0626-SM-4B65B 45.8
GTEX-PLZ6-0126-SM-48TC6 45.7
GTEX-139T6-0226-SM-5IFGZ 45.5
GTEX-13S86-0126-SM-5S2PI 45.3
GTEX-14E6E-1226-SM-5S2R5 45.3
GTEX-W5WG-0626-SM-4SOID 45.3
GTEX-P4PP-0926-SM-48TBZ 44.9
GTEX-13FH7-1326-SM-5IFG8 44.7
GTEX-13PVR-0326-SM-5RQJY 44.1
GTEX-QV44-0126-SM-4R1KH 44.1
GTEX-1211K-0426-SM-5FQTP 43.6
GTEX-XAJ8-0126-SM-47JYG 43.6
GTEX-13PL7-1126-SM-5MR5O 42.8
GTEX-UJHI-0126-SM-4IHLP 42.8
GTEX-ZLWG-0426-SM-4WWFA 42.4
GTEX-Y8LW-0126-SM-4VBS1 41.9
GTEX-ZZPU-0126-SM-5E446 41.9
GTEX-1399R-0226-SM-5IJGG 41.8
GTEX-11EQ9-0426-SM-5A5JY 41.1
GTEX-Q734-0226-SM-48U1A 39.9
GTEX-XV7Q-0126-SM-4BRVK 38.8
GTEX-PW2O-0126-SM-48TC8 38.5
GTEX-Y3IK-0126-SM-4WWE9 38.0
GTEX-ZAB5-0526-SM-5CVMU 37.3
GTEX-11P7K-0426-SM-5BC5H 35.5
GTEX-13U4I-1626-SM-5IFFR 34.8
GTEX-139YR-0426-SM-5IFFV 34.1
Show all

SPLEEN - FANTOM5 CAGE

Average Tags Per Million

88.7

FANTOM5 sample id

Sample description

Tags Per Million

Spleen
Tags Per Million: 88.7
FF:10025-101D7 39,50,70 years, male 88.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.