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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA001830

 

Antibody CAB000360

 

Provider

Atlas Antibodies
Sigma-Aldrich
  AbD Serotec
 

Product name

HPA001830   MCA1308T  

Host species

Rabbit   Mouse  

Clonality

pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Not known  

Other gene match

   

Released in version

3   1  

References

3    

VALIDATION SUMMARY

 
 

Antibody HPA001830

 

Antibody CAB000360

 
Immunohistochemistry


Validated
 

Validated
 
Western blot

Supported   Uncertain  
Protein array

Supported    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA001830

 

Antibody CAB000360

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 

 

 
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 42 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human cerebral cortex shows strong cytoplasmic positivity in neuronal and glial cells.   Immunohistochemical staining of human cerebral cortex shows positivity in neuropil.  

Expression

RNA: detected in 24 tissues
Protein: detected in 16 cell types
  RNA: detected in 24 tissues
Protein: detected in 2 cell types
 

Retrieval

HIER pH6   None  

Antibody dilution

1:100   1:1000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.  
 

Standard validation

Supported    

   

Figure description

Synaptic staining in most regions of the brain, most abundant in hippocampus, cerebral cortex and olfactory bulb.    

WESTERN BLOT

 
 

Antibody HPA001830

 

Antibody CAB000360

 

Standard validation

Supported

Single band corresponding to the predicted size in kDa (+/-20%).
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
 

   

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY418912)
  Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

23.3   23.3, 10.7  

Antibody dilution

1:250   1:3000  

PROTEIN ARRAY

 
 

Antibody HPA001830

 

Antibody CAB000360

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:1000    

ANTIGEN INFORMATION

 
 

Antibody HPA001830

 

Antibody CAB000360

 

Antigen

Recombinant protein fragment   Not known  

Length (aa)

110    

Antigen sequence

SSDAYKKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTNDARENEM
DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEAN
QRATKMLGSG
   

Matching transcripts

SNAP25-003 - ENSP00000254976 [100%]
SNAP25-004 - ENSP00000307341 [100%]
   

Other gene match

   
ANTIGEN VIEW
SNAP25-003
SNAP25-004

RELEVANT PUBLICATIONS

 
 

Antibody HPA001830

 

Antibody CAB000360

 

1.

Tissue profiling of the mammalian central nervous system using human antibody-based proteomics
Mulder J et al
Mol Cell Proteomics 2009;8(7):1612-22
   

2.

Immunohistochemical approach to the pathogenesis of clinical cases of bovine Herpesvirus type 5 infections
Cardoso TC et al
Diagn Pathol 2010;5:57
   

3.

Novel pancreatic beta cell-specific proteins: antibody-based proteomics for identification of new biomarker candidates
Lindskog C et al
J Proteomics 2012;75(9):2611-20
   
 

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