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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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PRPF38B
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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:30.4TPM
GTEx:17.6RPKM
FANTOM5:75.9Tags Per Million

PROSTATE - Annotated protein expression

Annotated protein
expression

Glandular cells:Not detected
 

Antibody staining

Antibody HPA053255

 

Glandular cells

Not detected  
 
 
 

PROSTATE - HPA RNA-seq

Average TPM

30.4

overview Male, age 62
Sample 1
TPM: 26.2
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65
Sample 2
TPM: 36.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65
Sample 3
TPM: 35.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68
Sample 4
TPM: 36.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60
Sample 5
TPM: 30.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66
Sample 6
TPM: 25.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63
Sample 7
TPM: 39.7
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66
Sample 8
TPM: 26.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58
Sample 9
TPM: 32.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seq

Average RPKM

17.6

GTEx sample id

RPKM

 

Prostate

Prostate
RPKM: 17.6
Samples: 106

Max RPKM: 36.6
Min RPKM: 9.5
Std RPKM: 4.1
Median RPKM: 17.6
GTEX-ZY6K-1526-SM-5GZXE 36.6
GTEX-13FHO-2826-SM-5K7ZA 28.1
GTEX-S4Q7-1026-SM-4AD75 26.1
GTEX-13FTW-1226-SM-5LZZ1 24.8
GTEX-YB5E-1826-SM-5IFI4 24.1
GTEX-WFG7-1826-SM-3GIL1 23.9
GTEX-ZZ64-0926-SM-5E44L 23.7
GTEX-ZPU1-2026-SM-57WFI 23.3
GTEX-145LV-1226-SM-5S2QH 22.6
GTEX-13O61-1726-SM-5KM46 22.5
GTEX-12C56-1326-SM-5FQSV 22.3
GTEX-WOFM-0326-SM-4OOSL 22.3
GTEX-Y9LG-1826-SM-4VBQC 22.3
GTEX-11NSD-0826-SM-5986S 21.8
GTEX-117YX-1526-SM-5H12T 21.1
GTEX-ZTTD-2726-SM-57WFA 20.9
GTEX-111YS-1726-SM-5GIED 20.7
GTEX-139T6-1526-SM-5P9G6 20.7
GTEX-Q2AI-1126-SM-48U19 20.7
GTEX-QV31-1026-SM-4R1K3 20.7
GTEX-RWSA-2026-SM-47JX8 20.6
GTEX-WFG8-1826-SM-4LVM4 20.5
GTEX-YF7O-1926-SM-4W1YQ 20.4
GTEX-SNOS-1026-SM-4DM4Y 20.1
GTEX-11P7K-0626-SM-5985Z 20.0
GTEX-11TT1-2026-SM-5EQM8 20.0
GTEX-X5EB-1826-SM-4E3K8 20.0
GTEX-ZT9W-1626-SM-4YCDQ 19.9
GTEX-OOBJ-2026-SM-3NB1R 19.7
GTEX-1399R-0526-SM-5IJEF 19.6
GTEX-XMK1-1026-SM-4B65H 19.6
GTEX-11P82-1126-SM-5BC5K 19.5
GTEX-PLZ6-1126-SM-3P5ZR 19.5
GTEX-QLQ7-1326-SM-4R1JY 19.3
GTEX-WH7G-1726-SM-4LVKY 19.3
GTEX-YJ8A-1126-SM-5IFJU 19.3
GTEX-12BJ1-1226-SM-5LUAE 19.2
GTEX-13N2G-1826-SM-5KM1I 19.2
GTEX-U4B1-1426-SM-4DXTX 19.2
GTEX-144GM-0826-SM-5O98R 19.1
GTEX-ZDYS-1226-SM-5IJF3 19.1
GTEX-U8XE-2526-SM-4E3IT 18.9
GTEX-S95S-1026-SM-4B64M 18.8
GTEX-132QS-1126-SM-5P9GC 18.7
GTEX-WFON-1626-SM-4LVMV 18.7
GTEX-V1D1-1926-SM-4JBGX 18.3
GTEX-U3ZM-0926-SM-4DXSW 18.0
GTEX-11DYG-2526-SM-5N9BB 17.8
GTEX-13O21-1126-SM-5N9EV 17.8
GTEX-QMRM-1426-SM-4R1K8 17.8
GTEX-13NYS-1026-SM-5KLZT 17.7
GTEX-148VJ-1826-SM-5Q5DV 17.7
GTEX-RM2N-1126-SM-48FCY 17.6
GTEX-XAJ8-0626-SM-47JY4 17.6
GTEX-111CU-1526-SM-5N9FS 17.4
GTEX-146FQ-1726-SM-5QGPX 17.4
GTEX-OIZH-2026-SM-3NB1M 17.1
GTEX-UTHO-2726-SM-4JBH9 16.9
GTEX-VJYA-1226-SM-3GIJ6 16.8
GTEX-13OW8-0426-SM-5J2NR 16.7
GTEX-145LT-0626-SM-5O99E 16.7
GTEX-S33H-1826-SM-4AD65 16.7
GTEX-U412-2026-SM-4DXSI 16.6
GTEX-ZLFU-1726-SM-4WWBU 16.6
GTEX-11O72-2726-SM-5HL6K 16.1
GTEX-12ZZZ-2026-SM-5LZWJ 16.1
GTEX-QV44-1526-SM-4R1KI 16.1
GTEX-14ABY-0726-SM-5Q5DF 15.9
GTEX-ZVP2-0826-SM-59HJ6 15.9
GTEX-XPVG-2026-SM-4B65E 15.8
GTEX-Y8E4-2126-SM-5RQHO 15.8
GTEX-ZTX8-1026-SM-5EGHD 15.7
GTEX-SNMC-0926-SM-4DM5U 15.6
GTEX-14E6E-1126-SM-5S2R4 15.5
GTEX-11TUW-2126-SM-5GU7B 15.4
GTEX-S3XE-1326-SM-4AD4H 15.2
GTEX-T8EM-1826-SM-4DM7F 15.2
GTEX-XGQ4-1826-SM-4AT6F 15.2
GTEX-111FC-2026-SM-5GZYO 14.7
GTEX-ZUA1-2826-SM-59HLE 14.7
GTEX-13FXS-2826-SM-5LZYC 14.5
GTEX-V955-1826-SM-4JBIL 14.4
GTEX-11OF3-1726-SM-5GU5Q 14.3
GTEX-SJXC-2026-SM-4DM6N 14.2
GTEX-REY6-2126-SM-48FD9 14.0
GTEX-NFK9-2226-SM-3MJGP 13.8
GTEX-131XF-1926-SM-5DUW4 13.7
GTEX-XQ3S-2526-SM-4BOOG 13.6
GTEX-1399T-1226-SM-5P9J5 13.4
GTEX-WZTO-0926-SM-4PQZ3 13.4
GTEX-117YW-1426-SM-5EGGO 13.2
GTEX-11WQK-2726-SM-5EQMU 12.7
GTEX-12696-2226-SM-5EQ65 12.7
GTEX-11EQ9-1726-SM-5HL6U 12.4
GTEX-11ZUS-2126-SM-5N9E6 12.3
GTEX-14C5O-2826-SM-5RQI6 12.3
GTEX-NPJ8-2426-SM-3MJHL 12.3
GTEX-13G51-2326-SM-5LZXV 11.8
GTEX-14BMV-2326-SM-5RQJ4 11.8
GTEX-XOTO-2826-SM-4B65I 11.7
GTEX-132NY-2826-SM-5P9G2 11.5
GTEX-QEG4-2226-SM-4R1JM 11.2
GTEX-OOBK-2025-SM-3LK5S 10.9
GTEX-WK11-2626-SM-4OOSK 10.9
GTEX-13111-1326-SM-5GCNO 10.3
GTEX-13RTJ-2126-SM-5S2PZ 9.5
Show all

PROSTATE - FANTOM5 CAGE

Average Tags Per Million

75.9

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 75.9
FF:10022-101D4 73,79,93 years, male 75.9

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