We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
NAPG
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:12.6RPKM
FANTOM5:78.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA008208

 

Antibody HPA011389

 

Glial cells

Low   Medium  

Neuronal cells

Medium   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

12.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 12.6
Samples: 117

Max RPKM: 30.5
Min RPKM: 3.8
Std RPKM: 4.4
Median RPKM: 12
GTEX-T2IS-0011-R5A-SM-32QP4 30.5
GTEX-UTHO-0011-R5A-SM-3GIJD 24.0
GTEX-P44H-0011-R5A-SM-2XCEX 22.5
GTEX-PVOW-0011-R5A-SM-32PL7 22.3
GTEX-T6MN-0011-R5A-SM-32QPD 22.1
GTEX-S7SE-0011-R5A-SM-2XCDA 19.2
GTEX-131YS-0011-R5b-SM-5K7YB 18.7
GTEX-14BIM-0011-R5b-SM-5S2RM 18.7
GTEX-1313W-0011-R5b-SM-5L3EP 18.4
GTEX-139TT-0011-R5b-SM-5K7W8 18.1
GTEX-QVJO-0011-R5A-SM-2S1QM 18.0
GTEX-WVLH-0011-R5A-SM-3MJFW 17.9
GTEX-N7MS-0011-R5a-SM-2HMK8 17.7
GTEX-12WSC-0011-R5b-SM-5CVNS 17.6
GTEX-1399T-0011-R5b-SM-5IJDK 17.5
GTEX-11OF3-0011-R5a-SM-57WB4 17.2
GTEX-13G51-0011-R5a-SM-5L3EB 17.2
GTEX-145MH-0011-R5a-SM-5P9JT 17.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 17.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 16.9
GTEX-WWYW-0011-R5A-SM-3NB3E 16.8
GTEX-Z93S-0011-R5b-SM-4RGNI 16.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 16.3
GTEX-RU72-0011-R5A-SM-2TF6U 16.2
GTEX-WL46-0011-R5A-SM-3LK6V 16.2
GTEX-WZTO-0011-R5B-SM-3NMC5 16.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 15.7
GTEX-13X6I-0011-R5a-SM-5PNWW 15.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 15.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 15.5
GTEX-12WSF-0011-R5a-SM-5HL8K 15.4
GTEX-X585-0011-R5A-SM-46MVI 15.2
GTEX-14ABY-0011-R5b-SM-5SI7B 15.1
GTEX-13O3O-0011-R5b-SM-5KM44 14.9
GTEX-145LS-0011-R5a-SM-5SI65 14.8
GTEX-11GSP-0011-R5a-SM-57WBE 14.6
GTEX-13X6J-0011-R5b-SM-5PNWT 14.6
GTEX-13VXU-0011-R5a-SM-5O9D7 14.4
GTEX-11H98-0011-R5b-SM-57WCF 14.3
GTEX-132Q8-0011-R5a-SM-5IJDM 14.3
GTEX-13OVL-0011-R5b-SM-5L3FU 14.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 14.1
GTEX-N7MT-0011-R5a-SM-2I3G6 13.9
GTEX-12WSB-0011-R5b-SM-5GU67 13.7
GTEX-13NYS-0011-R5a-SM-5MR4D 13.7
GTEX-QMR6-0011-R5A-SM-32PKT 13.6
GTEX-11NV4-0011-R5a-SM-5NQ88 13.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 13.4
GTEX-ZUA1-0011-R5b-SM-51MTG 13.4
GTEX-13FXS-0011-R5b-SM-5LZYE 13.3
GTEX-R55E-0011-R5A-SM-2TC5N 13.2
GTEX-X4XX-0011-R5A-SM-46MWN 13.2
GTEX-13SLX-0011-R5a-SM-5O9BV 13.0
GTEX-13OW7-0011-R5b-SM-5O9DM 12.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 12.7
GTEX-RVPV-0011-R5A-SM-2TF69 12.5
GTEX-13OW6-0011-R5a-SM-5O9BK 12.4
GTEX-T5JC-0011-R5A-SM-32PLK 12.1
GTEX-RVPU-0011-R5A-SM-2XCAD 12.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 11.9
GTEX-XMD1-0011-R5A-SM-4AT47 11.8
GTEX-13OW5-0011-R5b-SM-5L3FR 11.5
GTEX-ZE7O-0011-R5a-SM-57WBO 11.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 11.5
GTEX-13FLV-0011-R5a-SM-5LZWT 11.4
GTEX-13FLW-0011-R5a-SM-5LZX6 11.4
GTEX-13JUV-0011-R5a-SM-5LZY5 11.4
GTEX-13X6K-0011-R5b-SM-5PNUE 11.4
GTEX-12WSD-0011-R5b-SM-5CVNG 11.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 11.3
GTEX-OHPN-0011-R5A-SM-2I5FF 11.2
GTEX-12WSA-0011-R5b-SM-5GU5I 11.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 10.9
GTEX-13S7M-0011-R5b-SM-5P9HS 10.9
GTEX-YFC4-0011-R5a-SM-4RGLR 10.9
GTEX-13CZV-0011-R5a-SM-5K7XA 10.7
GTEX-NL4W-0011-R5a-SM-2I3GD 10.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 10.7
GTEX-ZXG5-0011-R5b-SM-57WBN 10.7
GTEX-14BIN-0011-R5b-SM-5SI78 10.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 10.2
GTEX-13NYB-0011-R5a-SM-5MR45 10.1
GTEX-13OVH-0011-R5b-SM-5KM4L 10.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 10.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 9.7
GTEX-12ZZX-0011-R5a-SM-5HL89 9.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 9.5
GTEX-TSE9-0011-R5A-SM-3DB7J 9.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 9.0
GTEX-13JVG-0011-R5a-SM-5MR4O 9.0
GTEX-NL3H-0011-R5a-SM-2I3GB 9.0
GTEX-11WQC-0011-R5a-SM-5BC74 8.9
GTEX-144GO-0011-R5a-SM-5PNUR 8.8
GTEX-OXRN-0011-R5A-SM-2I5EF 8.8
GTEX-X261-0011-R5A-SM-3NMB4 8.8
GTEX-139TS-0011-R5b-SM-5J2MZ 8.7
GTEX-1445S-0011-R5a-SM-5PNUS 8.7
GTEX-NPJ7-0011-R5a-SM-33HBK 8.7
GTEX-XOTO-0011-R5A-SM-4B657 8.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 7.9
GTEX-ZVT3-0011-R5a-SM-51MSI 7.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 7.8
GTEX-YJ89-0011-R5a-SM-4V6GM 7.3
GTEX-13CIG-0011-R5b-SM-5L3F2 7.2
GTEX-ZV68-0011-R5a-SM-4YCDW 7.2
GTEX-S7PM-0011-R5A-SM-3NM8G 7.1
GTEX-13112-0011-R5b-SM-5DUV8 6.8
GTEX-144GL-0011-R5b-SM-5PNUJ 6.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 6.3
GTEX-12WSH-0011-R5b-SM-5P9F3 6.2
GTEX-1477Z-0011-R5b-SM-5PNUO 6.1
GTEX-11UD1-0011-R5b-SM-5P9FP 5.8
GTEX-13FHP-0011-R5b-SM-5LZY2 5.6
GTEX-13CF2-0011-R5a-SM-5LZWS 5.3
GTEX-139T8-0011-R5b-SM-5J1MO 5.1
GTEX-145MG-0011-R5b-SM-5S2VU 3.9
GTEX-13NZA-0011-R5b-SM-5KM4K 3.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

78.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 78.1
FF:10379-105H1 89 years, female 78.7
FF:10164-103B2 76 years, female 77.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.