We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ROCK2
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:21.6TPM
GTEx:9.2RPKM
FANTOM5:28.6Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Medium
 

Antibody staining

Antibody HPA007459

 

Antibody CAB008666

 

Glandular cells

Medium   Low  
   
   
   

SMALL INTESTINE - HPA RNA-seq

Average TPM

21.6

overview Male, age 65
Sample 1
TPM: 22.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 20.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 23.1
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 20.5

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

9.2

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 9.2
Samples: 88

Max RPKM: 14.7
Min RPKM: 5.8
Std RPKM: 1.9
Median RPKM: 9.2
GTEX-111CU-1326-SM-5NQ8L 14.7
GTEX-ZYWO-1526-SM-5SIAL 13.4
GTEX-13O21-1026-SM-5IJDU 13.4
GTEX-12WSK-1526-SM-5CVNO 12.7
GTEX-139YR-2226-SM-5IFFW 12.6
GTEX-WFG8-1626-SM-4LVMB 12.5
GTEX-ZLV1-1126-SM-4WWBW 12.3
GTEX-145ME-0926-SM-5O9AR 12.2
GTEX-ZPCL-1726-SM-57WEO 11.9
GTEX-1192X-2526-SM-59868 11.8
GTEX-ZVT2-2126-SM-5NQ93 11.4
GTEX-145LT-1026-SM-5LU9O 11.4
GTEX-13D11-0726-SM-5LZZB 11.0
GTEX-XGQ4-1326-SM-4GIDU 11.0
GTEX-ZXES-1526-SM-5NQ95 10.9
GTEX-131XG-1726-SM-5LZUR 10.8
GTEX-1399S-2026-SM-5KM4B 10.7
GTEX-Y9LG-1626-SM-5IFHM 10.7
GTEX-ZF2S-1726-SM-57WFT 10.6
GTEX-ZTX8-0526-SM-59HLD 10.5
GTEX-ZQUD-0926-SM-57WE3 10.5
GTEX-YB5E-1526-SM-5IFIE 10.3
GTEX-13OVI-1926-SM-5IJCG 10.2
GTEX-13QBU-1926-SM-5IJEW 10.2
GTEX-148VJ-2226-SM-5NQ9M 10.2
GTEX-ZTPG-2626-SM-57WFX 10.2
GTEX-14DAR-1426-SM-5RQIR 10.1
GTEX-11EQ9-1326-SM-5985X 10.0
GTEX-133LE-1426-SM-5IFH1 9.9
GTEX-ZTSS-0926-SM-59865 9.9
GTEX-13113-1226-SM-5EGHT 9.8
GTEX-13RTK-0826-SM-5Q5C6 9.8
GTEX-13PL7-2626-SM-5IFH4 9.7
GTEX-139T6-1026-SM-5IJGC 9.6
GTEX-ZP4G-1626-SM-57WGD 9.6
GTEX-Y3IK-1726-SM-4YCCR 9.6
GTEX-1399R-2026-SM-5K7WN 9.5
GTEX-XBED-1426-SM-4AT4G 9.4
GTEX-XAJ8-0526-SM-47JYK 9.4
GTEX-ZLFU-1526-SM-4WWBT 9.4
GTEX-11DXZ-1326-SM-5H11X 9.4
GTEX-11P7K-1626-SM-5GU63 9.2
GTEX-ZVZP-1826-SM-5GZXB 9.2
GTEX-117YX-0326-SM-5GICL 9.2
GTEX-ZZ64-0526-SM-5GZXM 9.2
GTEX-1399U-2126-SM-5IFEZ 9.1
GTEX-Y114-1426-SM-4TT6W 9.1
GTEX-XXEK-1026-SM-4BRUW 9.1
GTEX-XUZC-1426-SM-4BRV3 9.0
GTEX-WEY5-1526-SM-4LMJF 8.7
GTEX-11DXX-1626-SM-5H11H 8.6
GTEX-ZEX8-1826-SM-57WBH 8.5
GTEX-YF7O-1826-SM-5IFIU 8.5
GTEX-ZQG8-2526-SM-57WEQ 8.4
GTEX-ZPIC-2326-SM-57WDW 8.4
GTEX-131XF-1326-SM-5GCMQ 8.4
GTEX-13CF3-1226-SM-5LZXN 8.3
GTEX-Y5LM-1626-SM-4VDTB 8.3
GTEX-1122O-1326-SM-5H11F 8.2
GTEX-WFG7-1726-SM-4LVME 8.2
GTEX-13O61-1326-SM-5KM31 8.0
GTEX-11XUK-1426-SM-5EQMG 7.8
GTEX-13FTW-2026-SM-5IJE2 7.8
GTEX-11NSD-1726-SM-5N9C3 7.7
GTEX-VUSG-1726-SM-4KKZL 7.7
GTEX-11I78-1126-SM-5A5K5 7.7
GTEX-ZC5H-2326-SM-4WAYT 7.6
GTEX-XMK1-1826-SM-4B66F 7.6
GTEX-13111-1426-SM-5DUW3 7.6
GTEX-YEC4-1726-SM-4W21E 7.5
GTEX-ZVP2-1726-SM-5GU5P 7.4
GTEX-ZYFG-2026-SM-5E43Y 7.4
GTEX-12BJ1-1926-SM-5HL9Z 7.2
GTEX-14E6E-1626-SM-5RQI7 7.0
GTEX-Z9EW-0926-SM-5CVMM 7.0
GTEX-WQUQ-2426-SM-4MVNW 7.0
GTEX-11P82-0826-SM-5P9GU 6.9
GTEX-13FH7-1226-SM-5IJFK 6.7
GTEX-111YS-1426-SM-5GID8 6.6
GTEX-ZA64-1226-SM-5HL7B 6.6
GTEX-UPK5-2026-SM-4JBIM 6.6
GTEX-WFJO-0926-SM-4LVM2 6.6
GTEX-WRHK-1026-SM-4MVOD 6.5
GTEX-11VI4-1626-SM-5EQKO 6.2
GTEX-VJYA-0926-SM-4KL1N 6.2
GTEX-WH7G-1626-SM-4LVMY 5.9
GTEX-X5EB-1626-SM-4E3IV 5.9
GTEX-X15G-1426-SM-4PQZK 5.8
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

28.6

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 28.6
FF:10024-101D6 15,40,85 years, mixed 28.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.