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Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

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Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

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Score

Score

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Antibodies

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TBC1D4
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

TBC1D4

Gene description

TBC1 domain family, member 4

Protein class

Disease related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in most tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Pending external verification.

Reliability score

Approved based on 2 antibodies.
HPA040145 , HPA059885
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Tonsil

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

TBC1D4 (HGNC Symbol)

Synonyms

AS160, DKFZp779C0666, KIAA0603

Description

TBC1 domain family, member 4 (HGNC Symbol)

Entrez gene summary

This gene is a member of the Tre-2/BUB2/CDC16 domain family. The protein encoded by this gene is a Rab-GTPase-activating protein, and contains two phopshotyrosine-binding domains (PTB1 and PTB2), a calmodulin-binding domain (CBD), a Rab-GTPase domain, and multiple AKT phosphomotifs. This protein is thought to play an important role in glucose homeostasis by regulating the insulin-dependent trafficking of the glucose transporter 4 (GLUT4), important for removing glucose from the bloodstream into skeletal muscle and fat tissues. Reduced expression of this gene results in an increase in GLUT4 levels at the plasma membrane, suggesting that this protein is important in intracellular retention of GLUT4 under basal conditions. When exposed to insulin, this protein is phosphorylated, dissociates from GLUT4 vesicles, resulting in increased GLUT4 at the cell surface, and enhanced glucose transport. Phosphorylation of this protein by AKT is required for proper translocation of GLUT4 to the cell surface. Individuals homozygous for a mutation in this gene are at higher risk for type 2 diabetes and have higher levels of circulating glucose and insulin levels after glucose ingestion. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Aug 2015]

Chromosome

13

Cytoband

q22.2

Chromosome location (bp)

75284665 - 75482114

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000136111 (version 83.38)

Entrez gene

9882

UniProt

O60343 (UniProt - Evidence at protein level)

neXtProt

NX_O60343

Antibodypedia

TBC1D4 antibodies

PROTEIN BROWSER

TBC1D4-001
TBC1D4-004
TBC1D4-201
TBC1D4-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TBC1D4-001
ENSP00000366863
ENST00000377636
O60343 [Direct mapping]
TBC1 domain family member 4
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0016192 [vesicle-mediated transport]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0031339 [negative regulation of vesicle fusion]
GO:0031988 [membrane-bounded vesicle]
GO:0032869 [cellular response to insulin stimulus]
GO:0043547 [positive regulation of GTPase activity]
GO:0061024 [membrane organization]
GO:0070062 [extracellular exosome]
Show all
1298 aa
146.6 kDa
No 0
TBC1D4-004
ENSP00000396932
ENST00000413735
Q5JU47 [Direct mapping]
TBC1 domain family member 4
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
282 aa
31.3 kDa
No 0
TBC1D4-201
ENSP00000366852
ENST00000377625
O60343 [Direct mapping]
TBC1 domain family member 4
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0016192 [vesicle-mediated transport]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0032869 [cellular response to insulin stimulus]
GO:0043547 [positive regulation of GTPase activity]
GO:0061024 [membrane organization]
GO:0070062 [extracellular exosome]
Show all
1235 aa
139.6 kDa
No 0
TBC1D4-202
ENSP00000395986
ENST00000431480
O60343 [Direct mapping]
TBC1 domain family member 4
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0016192 [vesicle-mediated transport]
GO:0030659 [cytoplasmic vesicle membrane]
GO:0032869 [cellular response to insulin stimulus]
GO:0043547 [positive regulation of GTPase activity]
GO:0061024 [membrane organization]
GO:0070062 [extracellular exosome]
Show all
1290 aa
145.7 kDa
No 0

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