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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:35.7TPM
GTEx:24.2RPKM
FANTOM5:112.9Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Medium
 

Antibody staining

Antibody HPA055893

 

Antibody CAB000084

 

Antibody CAB010307

 

Glandular cells

Low   Low   Medium  
     
     
     

SMALL INTESTINE - HPA RNA-seq

Average TPM

35.7

overview Male, age 65
Sample 1
TPM: 29.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 24.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 51.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 37.3

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

24.2

GTEx sample id

RPKM

13.221.228.32.250.50102030405060708090100110
 
13.221.228.32.250.50102030405060708090100110

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 24.2
Samples: 88

Max RPKM: 117.5
Min RPKM: 2.2
Std RPKM: 18.2
Median RPKM: 21.2
GTEX-WEY5-1526-SM-4LMJF 117.5
GTEX-ZQUD-0926-SM-57WE3 91.9
GTEX-117YX-0326-SM-5GICL 76.9
GTEX-13111-1426-SM-5DUW3 62.7
GTEX-111CU-1326-SM-5NQ8L 60.5
GTEX-Y114-1426-SM-4TT6W 57.4
GTEX-WFG8-1626-SM-4LVMB 50.5
GTEX-WFG7-1726-SM-4LVME 44.1
GTEX-1399U-2126-SM-5IFEZ 42.9
GTEX-WRHK-1026-SM-4MVOD 41.4
GTEX-131XG-1726-SM-5LZUR 36.7
GTEX-13OVI-1926-SM-5IJCG 36.5
GTEX-XXEK-1026-SM-4BRUW 35.0
GTEX-13QBU-1926-SM-5IJEW 34.6
GTEX-ZP4G-1626-SM-57WGD 32.3
GTEX-139T6-1026-SM-5IJGC 32.1
GTEX-13FH7-1226-SM-5IJFK 31.8
GTEX-ZVP2-1726-SM-5GU5P 31.5
GTEX-Z9EW-0926-SM-5CVMM 30.4
GTEX-12BJ1-1926-SM-5HL9Z 29.1
GTEX-X15G-1426-SM-4PQZK 29.1
GTEX-13RTK-0826-SM-5Q5C6 28.4
GTEX-XAJ8-0526-SM-47JYK 28.3
GTEX-11VI4-1626-SM-5EQKO 28.3
GTEX-UPK5-2026-SM-4JBIM 27.6
GTEX-139YR-2226-SM-5IFFW 26.3
GTEX-WFJO-0926-SM-4LVM2 25.8
GTEX-Y5LM-1626-SM-4VDTB 25.6
GTEX-11P82-0826-SM-5P9GU 25.2
GTEX-145ME-0926-SM-5O9AR 25.0
GTEX-ZLFU-1526-SM-4WWBT 24.5
GTEX-13O61-1326-SM-5KM31 24.5
GTEX-ZTPG-2626-SM-57WFX 23.8
GTEX-ZVT2-2126-SM-5NQ93 23.1
GTEX-13O21-1026-SM-5IJDU 23.0
GTEX-11XUK-1426-SM-5EQMG 22.9
GTEX-WH7G-1626-SM-4LVMY 22.5
GTEX-1192X-2526-SM-59868 22.4
GTEX-XGQ4-1326-SM-4GIDU 22.1
GTEX-ZYWO-1526-SM-5SIAL 21.9
GTEX-11NSD-1726-SM-5N9C3 21.9
GTEX-12WSK-1526-SM-5CVNO 21.8
GTEX-ZQG8-2526-SM-57WEQ 21.4
GTEX-1399S-2026-SM-5KM4B 21.3
GTEX-148VJ-2226-SM-5NQ9M 21.1
GTEX-ZEX8-1826-SM-57WBH 20.9
GTEX-XMK1-1826-SM-4B66F 20.4
GTEX-14E6E-1626-SM-5RQI7 19.8
GTEX-ZC5H-2326-SM-4WAYT 19.4
GTEX-11DXX-1626-SM-5H11H 19.0
GTEX-13FTW-2026-SM-5IJE2 18.1
GTEX-ZTSS-0926-SM-59865 17.5
GTEX-XBED-1426-SM-4AT4G 17.3
GTEX-ZPIC-2326-SM-57WDW 16.1
GTEX-ZZ64-0526-SM-5GZXM 15.6
GTEX-1399R-2026-SM-5K7WN 15.6
GTEX-13113-1226-SM-5EGHT 15.4
GTEX-VJYA-0926-SM-4KL1N 15.1
GTEX-Y3IK-1726-SM-4YCCR 15.1
GTEX-ZLV1-1126-SM-4WWBW 14.2
GTEX-11EQ9-1326-SM-5985X 14.1
GTEX-ZVZP-1826-SM-5GZXB 13.5
GTEX-13CF3-1226-SM-5LZXN 13.4
GTEX-13D11-0726-SM-5LZZB 13.4
GTEX-ZTX8-0526-SM-59HLD 13.2
GTEX-13PL7-2626-SM-5IFH4 13.2
GTEX-11P7K-1626-SM-5GU63 13.1
GTEX-133LE-1426-SM-5IFH1 13.0
GTEX-WQUQ-2426-SM-4MVNW 12.7
GTEX-11I78-1126-SM-5A5K5 12.4
GTEX-131XF-1326-SM-5GCMQ 12.1
GTEX-11DXZ-1326-SM-5H11X 12.0
GTEX-ZXES-1526-SM-5NQ95 11.4
GTEX-XUZC-1426-SM-4BRV3 11.1
GTEX-ZYFG-2026-SM-5E43Y 10.7
GTEX-VUSG-1726-SM-4KKZL 10.6
GTEX-145LT-1026-SM-5LU9O 10.0
GTEX-Y9LG-1626-SM-5IFHM 9.7
GTEX-14DAR-1426-SM-5RQIR 9.7
GTEX-YB5E-1526-SM-5IFIE 9.3
GTEX-YF7O-1826-SM-5IFIU 9.2
GTEX-1122O-1326-SM-5H11F 7.5
GTEX-ZA64-1226-SM-5HL7B 7.0
GTEX-ZF2S-1726-SM-57WFT 6.6
GTEX-X5EB-1626-SM-4E3IV 6.3
GTEX-YEC4-1726-SM-4W21E 5.5
GTEX-ZPCL-1726-SM-57WEO 4.7
GTEX-111YS-1426-SM-5GID8 2.2
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

112.9

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 112.9
FF:10024-101D6 15,40,85 years, mixed 112.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.