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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

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Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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CCL21
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA051210

 

Antibody CAB005067

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
 

Product name

HPA051210   sc-5808  

Host species

Rabbit   Goat  

Clonality

pAb   msAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity  

Other gene match

   

Released in version

13   2  

References

2    

VALIDATION SUMMARY

 
 

Antibody HPA051210

 

Antibody CAB005067

 
Immunohistochemistry

Supported   Supported  
Western blot

Supported   Uncertain  
Protein array

Supported    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA051210

 

Antibody CAB005067

 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human lymph node shows distinct positivity in a subset of lymphoid cells.   Immunohistochemical staining of human lymph node shows positivity in a small subset of vessels.  

Expression

RNA: detected in 35 tissues
Protein: detected in 12 cell types
  RNA: detected in 35 tissues
Protein: detected in 16 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:500   1:20  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA051210

 

Antibody CAB005067

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
 

   

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
   

Target mass (kDa)

14.6, 13.6   14.6, 13.6  

Antibody dilution

1:210   1:500  

PROTEIN ARRAY

 
 

Antibody HPA051210

 

Antibody CAB005067

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:1650    

ANTIGEN INFORMATION

 
 

Antibody HPA051210

 

Antibody CAB005067

 

Antigen

Recombinant protein fragment   Synthetic peptide  

Length (aa)

52    

Antigen sequence

KELWVQQLMQHLDKTPSPQKPAQGCRKDRGASKTGKKGKGSKGCKRTERS
QT
   

Matching transcripts

CCL21-002 - ENSP00000259607 [100%]
CCL21-001 - ENSP00000368069 [88%]
   

Other gene match

   
ANTIGEN VIEW
CCL21-001
CCL21-002

RELEVANT PUBLICATIONS

 
 

Antibody HPA051210

 

Antibody CAB005067

 

1.

The transcriptomic and proteomic landscapes of bone marrow and secondary lymphoid tissues
Andersson S et al
PLoS One 2014;9(12):e115911
   

2.

Expression of CCL21 in Ewing sarcoma shows an inverse correlation with metastases and is a candidate target for immunotherapy
Sand LG et al
Cancer Immunol Immunother 2016;65(8):995-1002
   
 

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