Expression of CCDC90B in cancer - Summary

CANCER ATLAS

Gene description

Coiled-coil domain containing 90B

Protein class

Predicted intracellular proteins, Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

STAINING SUMMARY

HPA011130	HPA011931

GENE INFORMATION
Gene name	CCDC90B (HGNC Symbol)
Synonyms	MDS011, MDS025
Description	Coiled-coil domain containing 90B (HGNC Symbol)
Entrez gene summary
Chromosome	11
Cytoband	q14.1
Chromosome location (bp)	83259097 - 83286407
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000137500 (version 83.38)
Entrez gene	60492
UniProt	Q9GZT6 (UniProt - Evidence at protein level)
neXtProt	NX_Q9GZT6
Antibodypedia	CCDC90B antibodies

PROTEIN BROWSER

CCDC90B-001	CCDC90B-003	CCDC90B-004	CCDC90B-006	CCDC90B-017	CCDC90B-018

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CCDC90B-001 ENSP00000434724 ENST00000529689	Q9GZT6 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005739 [mitochondrion] GO:0016021 [integral component of membrane] Show all	254 aa 29.5 kDa	No	1
CCDC90B-003 ENSP00000390990 ENST00000455220	Q9GZT6 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005739 [mitochondrion] GO:0016021 [integral component of membrane] Show all	245 aa 28 kDa	No	1
CCDC90B-004 ENSP00000431345 ENST00000529611	Q9GZT6 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005739 [mitochondrion] GO:0016021 [integral component of membrane] Show all	153 aa 17.8 kDa	No	1
CCDC90B-006 ENSP00000431424 ENST00000525503	Q9GZT6 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005739 [mitochondrion] GO:0016021 [integral component of membrane] Show all	153 aa 17.8 kDa	No	1
CCDC90B-017 ENSP00000431523 ENST00000529073	E9PKQ5 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005739 [mitochondrion] Show all	208 aa 24.3 kDa	No	0
CCDC90B-018 ENSP00000436974 ENST00000527495	H0YF06 [Direct mapping] Coiled-coil domain-containing protein 90B, mitochondrial Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		133 aa 15.5 kDa	No	0