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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:85.1TPM
GTEx:42.1RPKM
FANTOM5:176.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA018014

  

Antibody CAB015415

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   High  
   
   

COLON - HPA RNA-seq

Average TPM

85.1
overview Male, age 54
Sample 1
TPM: 100.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 80.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 64.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 95.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 84.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 47.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 96.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 95.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 80.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 81.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 113.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 94.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 71.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

42.1

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 40.3
Samples: 149

Max RPKM: 68.2
Min RPKM: 21.2
Std RPKM: 7
Median RPKM: 39.7
GTEX-13SLW-2826-SM-5Q5ES 68.2
GTEX-11WQK-2526-SM-5CVL8 58.6
GTEX-132AR-2826-SM-5IJFV 58.6
GTEX-WHPG-1626-SM-4M1ZL 55.6
GTEX-14E6E-1726-SM-5S2R6 51.7
GTEX-131XG-1526-SM-5GCNQ 51.6
GTEX-XUZC-1526-SM-4BRV4 51.6
GTEX-139D8-2926-SM-5IJBM 51.3
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 43.5
Samples: 196

Max RPKM: 65.8
Min RPKM: 23.5
Std RPKM: 8.7
Median RPKM: 42.8
GTEX-11TTK-2426-SM-5PNYO 65.8
GTEX-ZYWO-1626-SM-5E44H 65.5
GTEX-12ZZZ-2426-SM-5GCNN 64.1
GTEX-14E6E-1526-SM-5RQIG 64.1
GTEX-13O3O-2526-SM-5L3DR 63.3
GTEX-ZXES-1626-SM-5NQ7L 63.1
GTEX-O5YW-1426-SM-3MJHF 62.7
GTEX-11EM3-1526-SM-5A5KN 62.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

176.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 176.2
FF:10014-101C5 62,83,84 years, mixed 176.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.