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SMARCC2
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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:27.9RPKM
FANTOM5:58.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA021213

 

Antibody CAB004321

 

Glial cells

High   Medium  

Neuronal cells

High   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

27.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 27.9
Samples: 117

Max RPKM: 42.5
Min RPKM: 12.7
Std RPKM: 7.4
Median RPKM: 28.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 42.5
GTEX-13G51-0011-R5a-SM-5L3EB 41.8
GTEX-X4XX-0011-R5A-SM-46MWN 41.7
GTEX-QVJO-0011-R5A-SM-2S1QM 41.1
GTEX-145MH-0011-R5a-SM-5P9JT 40.6
GTEX-131YS-0011-R5b-SM-5K7YB 40.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 39.8
GTEX-XMD1-0011-R5A-SM-4AT47 39.3
GTEX-N7MS-0011-R5a-SM-2HMK8 38.7
GTEX-UTHO-0011-R5A-SM-3GIJD 38.7
GTEX-11GSP-0011-R5a-SM-57WBE 37.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 37.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 37.9
GTEX-R55E-0011-R5A-SM-2TC5N 37.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 37.2
GTEX-S7SE-0011-R5A-SM-2XCDA 37.2
GTEX-13OW6-0011-R5a-SM-5O9BK 36.7
GTEX-1313W-0011-R5b-SM-5L3EP 36.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 36.6
GTEX-13X6I-0011-R5a-SM-5PNWW 36.4
GTEX-N7MT-0011-R5a-SM-2I3G6 36.1
GTEX-11OF3-0011-R5a-SM-57WB4 36.0
GTEX-144GO-0011-R5a-SM-5PNUR 34.6
GTEX-11H98-0011-R5b-SM-57WCF 34.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 34.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 34.0
GTEX-RU72-0011-R5A-SM-2TF6U 33.9
GTEX-132Q8-0011-R5a-SM-5IJDM 33.3
GTEX-139TT-0011-R5b-SM-5K7W8 33.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 33.2
GTEX-145LS-0011-R5a-SM-5SI65 33.1
GTEX-14ABY-0011-R5b-SM-5SI7B 33.0
GTEX-13OVL-0011-R5b-SM-5L3FU 32.8
GTEX-13SLX-0011-R5a-SM-5O9BV 32.7
GTEX-13X6J-0011-R5b-SM-5PNWT 32.7
GTEX-14BIM-0011-R5b-SM-5S2RM 32.5
GTEX-WZTO-0011-R5B-SM-3NMC5 32.0
GTEX-13FLW-0011-R5a-SM-5LZX6 31.9
GTEX-13VXU-0011-R5a-SM-5O9D7 31.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 31.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 31.5
GTEX-WL46-0011-R5A-SM-3LK6V 31.5
GTEX-X585-0011-R5A-SM-46MVI 31.4
GTEX-T5JC-0011-R5A-SM-32PLK 31.1
GTEX-WVLH-0011-R5A-SM-3MJFW 31.0
GTEX-13OW5-0011-R5b-SM-5L3FR 30.7
GTEX-13S7M-0011-R5b-SM-5P9HS 30.7
GTEX-Z93S-0011-R5b-SM-4RGNI 30.6
GTEX-13FXS-0011-R5b-SM-5LZYE 30.4
GTEX-12WSA-0011-R5b-SM-5GU5I 30.2
GTEX-NL3H-0011-R5a-SM-2I3GB 29.6
GTEX-T6MN-0011-R5A-SM-32QPD 29.1
GTEX-12WSC-0011-R5b-SM-5CVNS 28.8
GTEX-P44H-0011-R5A-SM-2XCEX 28.8
GTEX-13JUV-0011-R5a-SM-5LZY5 28.7
GTEX-PVOW-0011-R5A-SM-32PL7 28.7
GTEX-1399T-0011-R5b-SM-5IJDK 28.6
GTEX-13NYS-0011-R5a-SM-5MR4D 28.5
GTEX-13O3O-0011-R5b-SM-5KM44 28.5
GTEX-13OW7-0011-R5b-SM-5O9DM 28.5
GTEX-NL4W-0011-R5a-SM-2I3GD 28.5
GTEX-RVPV-0011-R5A-SM-2TF69 28.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 28.1
GTEX-11NV4-0011-R5a-SM-5NQ88 27.7
GTEX-WWYW-0011-R5A-SM-3NB3E 27.6
GTEX-13JVG-0011-R5a-SM-5MR4O 27.5
GTEX-ZXG5-0011-R5b-SM-57WBN 26.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 26.6
GTEX-12WSD-0011-R5b-SM-5CVNG 26.5
GTEX-13OVH-0011-R5b-SM-5KM4L 25.9
GTEX-13X6K-0011-R5b-SM-5PNUE 25.9
GTEX-YFC4-0011-R5a-SM-4RGLR 25.2
GTEX-13CZV-0011-R5a-SM-5K7XA 25.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 25.1
GTEX-12WSF-0011-R5a-SM-5HL8K 24.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 24.7
GTEX-ZUA1-0011-R5b-SM-51MTG 24.7
GTEX-ZE7O-0011-R5a-SM-57WBO 24.4
GTEX-1445S-0011-R5a-SM-5PNUS 24.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 24.1
GTEX-13NYB-0011-R5a-SM-5MR45 24.0
GTEX-13FLV-0011-R5a-SM-5LZWT 23.9
GTEX-12WSB-0011-R5b-SM-5GU67 23.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 23.2
GTEX-QMR6-0011-R5A-SM-32PKT 22.7
GTEX-139TS-0011-R5b-SM-5J2MZ 22.6
GTEX-OXRN-0011-R5A-SM-2I5EF 22.5
GTEX-RVPU-0011-R5A-SM-2XCAD 22.4
GTEX-12ZZX-0011-R5a-SM-5HL89 22.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.0
GTEX-XOTO-0011-R5A-SM-4B657 22.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 21.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 21.4
GTEX-11UD1-0011-R5b-SM-5P9FP 21.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 21.3
GTEX-X261-0011-R5A-SM-3NMB4 21.3
GTEX-14BIN-0011-R5b-SM-5SI78 20.2
GTEX-T2IS-0011-R5A-SM-32QP4 20.0
GTEX-NPJ7-0011-R5a-SM-33HBK 19.5
GTEX-TSE9-0011-R5A-SM-3DB7J 19.5
GTEX-144GL-0011-R5b-SM-5PNUJ 19.1
GTEX-13112-0011-R5b-SM-5DUV8 18.4
GTEX-13CIG-0011-R5b-SM-5L3F2 17.7
GTEX-YJ89-0011-R5a-SM-4V6GM 17.4
GTEX-13FHP-0011-R5b-SM-5LZY2 17.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 17.3
GTEX-11WQC-0011-R5a-SM-5BC74 17.1
GTEX-ZVT3-0011-R5a-SM-51MSI 17.0
GTEX-OHPN-0011-R5A-SM-2I5FF 16.6
GTEX-13CF2-0011-R5a-SM-5LZWS 16.3
GTEX-S7PM-0011-R5A-SM-3NM8G 15.4
GTEX-1477Z-0011-R5b-SM-5PNUO 14.6
GTEX-12WSH-0011-R5b-SM-5P9F3 13.5
GTEX-145MG-0011-R5b-SM-5S2VU 13.2
GTEX-ZV68-0011-R5a-SM-4YCDW 13.2
GTEX-139T8-0011-R5b-SM-5J1MO 12.9
GTEX-13NZA-0011-R5b-SM-5KM4K 12.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

58.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 58.4
FF:10164-103B2 76 years, female 80.9
FF:10379-105H1 89 years, female 35.9

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