We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SMARCC2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:42.7TPM
GTEx:38.8RPKM
FANTOM5:26.3Tags Per Million

TESTIS - Annotated protein expression

Annotated protein
expression

Cells in seminiferous ducts:High
Leydig cells:High
 

Antibody staining

Antibody HPA021213

 

Antibody CAB004321

 

Cells in seminiferous ducts

High   High  

Leydig cells

High   High  
   
   
   

TESTIS - HPA RNA-seq

Average TPM

42.7

overview Male, age 56
Sample 1
TPM: 43.2
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 49.4
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 58.7
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 45.8
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 45.8
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 53.8
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 43.3
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 26.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 37.0
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 23.9
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seq

Average RPKM

38.8

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 38.8
Samples: 172

Max RPKM: 59.6
Min RPKM: 20.7
Std RPKM: 7.5
Median RPKM: 38.9
GTEX-YEC3-1726-SM-5IFIK 59.6
GTEX-YB5E-1926-SM-5IFIG 54.4
GTEX-145MH-2326-SM-5O9AW 53.5
GTEX-XPVG-2226-SM-4B65U 53.5
GTEX-132QS-1226-SM-5P9GD 53.2
GTEX-ZV7C-2026-SM-5NQ8F 53.0
GTEX-145LT-0426-SM-5LUAP 51.5
GTEX-VJYA-1426-SM-4KL1Y 51.1
GTEX-X5EB-2026-SM-4E3KA 51.0
GTEX-13O61-2026-SM-5J2M6 50.3
GTEX-ZUA1-2726-SM-59HLJ 49.9
GTEX-13NZB-2026-SM-5MR4M 49.8
GTEX-U4B1-1526-SM-4DXSL 49.8
GTEX-SNMC-1026-SM-4DM7K 49.6
GTEX-13OW6-0126-SM-5IJGM 49.5
GTEX-144GM-0426-SM-5Q5C8 49.3
GTEX-11DXZ-2126-SM-59881 49.1
GTEX-1399R-1626-SM-5P9GG 48.9
GTEX-RM2N-1326-SM-48FCW 48.9
GTEX-111VG-1926-SM-5GIDO 48.7
GTEX-S33H-0126-SM-4AD62 48.5
GTEX-WZTO-0326-SM-4PQYZ 48.5
GTEX-Q2AI-1226-SM-48U14 48.4
GTEX-11P7K-1026-SM-5HL6Y 48.1
GTEX-S3XE-1526-SM-4AD5A 47.3
GTEX-145MO-0126-SM-5S2QU 47.2
GTEX-13FTW-1326-SM-5LZZD 47.1
GTEX-WH7G-1926-SM-4LVMM 46.4
GTEX-XBEC-0126-SM-4GIDT 46.4
GTEX-S4Q7-1226-SM-4AD5I 46.3
GTEX-ZDTT-2026-SM-5K7TY 46.0
GTEX-U3ZH-1526-SM-4DXV1 45.8
GTEX-SNOS-1126-SM-4DM67 45.3
GTEX-11ONC-2226-SM-5HL6D 45.0
GTEX-ZA64-1626-SM-5CVME 44.9
GTEX-ZVZP-2226-SM-57WBF 44.8
GTEX-ZZ64-1126-SM-5GZXY 44.8
GTEX-X3Y1-2626-SM-4PQZI 44.6
GTEX-Q2AH-1526-SM-48TZG 44.5
GTEX-T8EM-0126-SM-4DM5R 44.5
GTEX-13O21-1226-SM-5J2MK 44.4
GTEX-11EQ9-1926-SM-5PNVV 44.3
GTEX-13NYB-2226-SM-5MR58 44.3
GTEX-ZDYS-1326-SM-5IJFF 44.3
GTEX-11LCK-2326-SM-5HL53 43.8
GTEX-13NZA-2526-SM-5IJFX 43.6
GTEX-RN64-2326-SM-48FDW 43.6
GTEX-1399Q-2826-SM-5IJEZ 43.5
GTEX-111YS-2026-SM-5EGGL 43.4
GTEX-QMRM-1526-SM-4R1K6 43.0
GTEX-ZYFC-0126-SM-5GIEH 42.7
GTEX-12WSM-1326-SM-5GCP9 42.6
GTEX-139TT-2226-SM-5LZWO 42.6
GTEX-XGQ4-2026-SM-4AT6G 42.5
GTEX-XMK1-2026-SM-4B65K 42.4
GTEX-12ZZY-0126-SM-5LZV2 42.3
GTEX-QLQ7-1426-SM-4R1JX 42.2
GTEX-XBED-2026-SM-4AT5D 42.2
GTEX-WFON-2026-SM-4LVMW 42.0
GTEX-131XE-0426-SM-5IJF4 41.7
GTEX-11NV4-1726-SM-5N9FC 41.6
GTEX-14A6H-2326-SM-5Q5B5 41.5
GTEX-ZT9X-1426-SM-5DUX1 41.5
GTEX-ZPU1-2126-SM-57WED 41.4
GTEX-11NSD-1026-SM-5N9BE 41.3
GTEX-Y111-2426-SM-4TT23 41.3
GTEX-ZVTK-0126-SM-57WDG 41.1
GTEX-S7SE-0326-SM-4AT5Q 41.0
GTEX-11TUW-2226-SM-5EQL9 40.9
GTEX-OOBK-2126-SM-3LK5T 40.9
GTEX-XAJ8-1326-SM-47JYT 40.8
GTEX-QLQW-1026-SM-447A9 40.7
GTEX-QV44-1726-SM-4R1KG 40.7
GTEX-12696-0226-SM-5EGL3 40.6
GTEX-ZAB5-2426-SM-5CVMW 40.1
GTEX-111CU-1726-SM-5EGHM 39.9
GTEX-WK11-0326-SM-4OOS6 39.9
GTEX-11GS4-2026-SM-5N9CP 39.7
GTEX-UPJH-0126-SM-4IHLL 39.7
GTEX-RWSA-2426-SM-47JXR 39.6
GTEX-11EI6-2226-SM-5EGJM 39.5
GTEX-U8XE-0126-SM-4E3I3 39.5
GTEX-11NUK-2626-SM-5A5MB 39.4
GTEX-X261-2326-SM-4PQYU 39.2
GTEX-Y9LG-1726-SM-4VBQE 39.2
GTEX-144GN-1626-SM-5Q5BU 39.1
GTEX-139T6-1226-SM-5IFFC 38.7
GTEX-P4QS-2126-SM-3NMCF 38.2
GTEX-12WSL-2326-SM-5DUXQ 38.1
GTEX-TKQ2-1526-SM-4DXUN 38.1
GTEX-U3ZM-1626-SM-4DXSK 38.1
GTEX-ZT9W-2226-SM-57WFU 38.0
GTEX-13111-1526-SM-5EGJX 37.8
GTEX-111FC-1926-SM-5GZYC 37.7
GTEX-WOFM-1126-SM-4OOSB 37.7
GTEX-OIZH-2126-SM-3NB1P 37.5
GTEX-REY6-0126-SM-48FDT 37.4
GTEX-WVLH-2626-SM-4MVNV 37.4
GTEX-12C56-1426-SM-5FQSW 37.3
GTEX-Y5V6-1726-SM-4VDSZ 37.3
GTEX-PLZ5-1526-SM-3P5ZX 37.2
GTEX-WFG8-1926-SM-4LVM1 37.1
GTEX-13OVH-0726-SM-5N9BU 37.0
GTEX-O5YT-2126-SM-3MJGD 36.9
GTEX-11WQK-2826-SM-5EQKH 36.7
GTEX-OOBJ-2126-SM-3NB1N 36.7
GTEX-TKQ1-0926-SM-4DXU2 36.6
GTEX-V1D1-2126-SM-4JBH4 36.4
GTEX-XPT6-1626-SM-4B655 36.3
GTEX-XQ3S-2726-SM-4BOP2 35.9
GTEX-NFK9-0126-SM-3LK5H 35.8
GTEX-V955-1926-SM-4KL1L 35.8
GTEX-ZAB4-0126-SM-5CVMG 35.8
GTEX-RUSQ-2126-SM-47JXK 35.7
GTEX-ZYT6-2726-SM-5GICP 35.7
GTEX-147JS-0126-SM-5S2TW 35.4
GTEX-ZTSS-1526-SM-51MTC 35.3
GTEX-S95S-1126-SM-4B64E 35.2
GTEX-117XS-2026-SM-5GID1 35.0
GTEX-13N1W-2626-SM-5IJEP 35.0
GTEX-R55D-0126-SM-48FEL 35.0
GTEX-OHPM-2126-SM-3LK75 34.8
GTEX-13VXU-0726-SM-5J2O7 34.7
GTEX-13OW5-2526-SM-5L3I1 34.4
GTEX-14753-0626-SM-5Q5CY 34.4
GTEX-13OVL-0426-SM-5IFG6 34.3
GTEX-11OF3-1826-SM-5987N 34.2
GTEX-R55C-1426-SM-48FED 34.1
GTEX-1339X-1926-SM-5PNVP 33.8
GTEX-YJ89-0626-SM-4TT3Z 33.8
GTEX-13N2G-0126-SM-5N9DV 33.6
GTEX-XLM4-1526-SM-4AT6D 33.5
GTEX-117YW-1526-SM-5EGGP 33.4
GTEX-12WSI-2126-SM-5GCMV 33.4
GTEX-U8T8-1126-SM-4DXUE 33.3
GTEX-13FLW-2126-SM-5N9FD 32.7
GTEX-OIZI-0126-SM-3NB13 32.2
GTEX-144GL-0726-SM-5LU4P 31.9
GTEX-1212Z-0326-SM-5FQSJ 31.7
GTEX-S7PM-0626-SM-4AD4Q 31.4
GTEX-11WQC-2326-SM-5EQKE 31.1
GTEX-T5JC-0726-SM-4DM55 30.8
GTEX-11TT1-2226-SM-5GU6B 30.7
GTEX-R55E-0726-SM-48FCZ 30.6
GTEX-13O1R-0726-SM-5IJEI 30.5
GTEX-139TS-1726-SM-5IJG5 30.3
GTEX-ZTX8-1126-SM-51MRM 30.0
GTEX-11O72-0726-SM-5P9GO 29.9
GTEX-OXRL-2126-SM-3NM98 29.8
GTEX-WHSB-2126-SM-4M1XF 29.3
GTEX-12WSH-0326-SM-5GCNH 29.1
GTEX-11ZUS-2726-SM-5FQUA 28.9
GTEX-QEG4-0126-SM-48TZE 28.9
GTEX-11P82-1526-SM-5BC5M 28.7
GTEX-N7MS-0126-SM-3TW8O 28.7
GTEX-11EQ8-1426-SM-5EGJR 28.5
GTEX-147F4-0626-SM-5LUAK 28.4
GTEX-QEG5-0126-SM-4R1JR 28.3
GTEX-QV31-1126-SM-4R1K4 28.1
GTEX-Y8E4-2226-SM-5LU94 27.5
GTEX-YF7O-2026-SM-4W1YE 27.4
GTEX-SUCS-1326-SM-4DM5T 26.8
GTEX-YFCO-1726-SM-4W21S 26.8
GTEX-ZQUD-2026-SM-51MSM 26.5
GTEX-Z93S-1726-SM-5HL8G 26.3
GTEX-14ABY-0626-SM-5Q5C9 25.5
GTEX-13112-0226-SM-5P9IV 25.4
GTEX-PW2O-1426-SM-48TCD 23.7
GTEX-T6MN-2026-SM-4DM7L 23.6
GTEX-P4QR-0226-SM-3NMCH 23.5
GTEX-YEC4-1526-SM-4W1YU 22.2
GTEX-13FHP-2826-SM-5IJFW 20.7
Show all

TESTIS - FANTOM5 CAGE

Average Tags Per Million

26.3

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 26.3
FF:10026-101D8 34,53,86 years, male 27.9
FF:10096-102C6 14-64 years, male 24.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.