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Field

Term
Gene name

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External id

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Validation

Method

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Method

Validation

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Cell type

Expression

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Specificity

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Specificity

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Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:11.4TPM
GTEx:26.6RPKM
FANTOM5:25.7Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:Medium
Cells in tubules:High
 

Antibody staining

Antibody HPA021641

 

Antibody HPA024553

 

Cells in glomeruli

Medium   Medium  

Cells in tubules

High   Medium  
   
   
   

KIDNEY - HPA RNA-seq

Average TPM

11.4

overview Female, age 58
Sample 1
TPM: 16.8
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 15.9
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 18.7
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 18.0
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 2.4
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 5.2
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 11.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 10.0
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 3.4
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

26.6

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 26.6
Samples: 32

Max RPKM: 57.7
Min RPKM: 15
Std RPKM: 9.3
Median RPKM: 25.4
GTEX-UPIC-1126-SM-4IHLO 57.7
GTEX-11TTK-1926-SM-5PNW8 44.0
GTEX-RN64-1626-SM-48FD7 44.0
GTEX-13112-2126-SM-5GCO4 37.5
GTEX-13RTJ-2226-SM-5S2Q1 36.9
GTEX-147F4-2626-SM-5Q5CS 32.3
GTEX-T5JC-1526-SM-4DM68 31.5
GTEX-12696-0926-SM-5FQTV 30.0
GTEX-ZLFU-0926-SM-5P9F8 29.8
GTEX-XPVG-0526-SM-4B65N 28.7
GTEX-ZVZP-0926-SM-5GIDB 28.6
GTEX-ZC5H-1726-SM-5HL7X 28.1
GTEX-ZYT6-2226-SM-5GIC9 28.0
GTEX-12WSG-0826-SM-5EQ5A 26.4
GTEX-13OVL-1826-SM-5KLZR 26.2
GTEX-13OVI-1126-SM-5KLZF 25.6
GTEX-1399S-0526-SM-5IJG8 25.3
GTEX-1497J-0826-SM-5NQAJ 23.3
GTEX-ZYFG-1626-SM-5GZYY 22.8
GTEX-11GS4-2326-SM-5A5KS 22.4
GTEX-P4QS-1126-SM-3NMD5 22.3
GTEX-QLQW-1626-SM-4R1K1 21.1
GTEX-145MN-0326-SM-5QGQI 21.0
GTEX-QDVN-1626-SM-48TZC 20.9
GTEX-13NYB-1726-SM-5N9G2 20.4
GTEX-13OW6-1826-SM-5N9F9 18.1
GTEX-13O1R-2526-SM-5N9FW 17.7
GTEX-ZYFD-1526-SM-5NQ7T 17.4
GTEX-11OF3-1326-SM-5N9FJ 16.3
GTEX-Y5V6-2026-SM-5IFHO 16.2
GTEX-NPJ8-2226-SM-3TW8D 15.7
GTEX-N7MS-1626-SM-3LK5F 15.0
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

25.7

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 25.7
FF:10017-101C8 60,62,63 years, female 25.7

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