Fields »
ABOUT
HELP
BLOG
ABCA8

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:16.6TPM
GTEx:10.6RPKM
FANTOM5:59.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA044914

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

16.6
overview Male, age 54
Sample 1
TPM: 14.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 21.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 4.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 14.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 13.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 11.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 16.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 28.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 16.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 8.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 27.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 20.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 16.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.6

GTEx sample id

RPKM
6.810.715.51.926.3051015202530354045505560
 
6.810.715.51.926.3051015202530354045505560

Colon - Sigmoid
Colon - Sigmoid
RPKM: 12.5
Samples: 149

Max RPKM: 64.5
Min RPKM: 1.9
Std RPKM: 8.3
Median RPKM: 10.7
GTEX-145LS-2926-SM-5O99G 64.5
GTEX-1477Z-2126-SM-5Q5CM 45.2
GTEX-13SLW-2826-SM-5Q5ES 34.9
GTEX-ZAJG-2626-SM-5S2NU 33.8
GTEX-12ZZY-2726-SM-5EQ45 32.7
GTEX-147GR-2826-SM-5RQK8 32.3
GTEX-WFON-1326-SM-4LVMN 31.5
GTEX-WI4N-2226-SM-4OOS9 28.6
Show all
5.37.310.51.417.90510152025303540455055
 
5.37.310.51.417.90510152025303540455055

Colon - Transverse
Colon - Transverse
RPKM: 9.2
Samples: 196

Max RPKM: 59.3
Min RPKM: 1.4
Std RPKM: 7.1
Median RPKM: 7.3
GTEX-13O3O-2526-SM-5L3DR 59.3
GTEX-14BMV-2426-SM-5S2PP 36.0
GTEX-145LS-2726-SM-5Q5D8 33.1
GTEX-12ZZZ-2426-SM-5GCNN 33.0
GTEX-11O72-2226-SM-5PNW2 31.6
GTEX-12KS4-2426-SM-5LU8P 29.7
GTEX-ZAB4-2226-SM-5HL97 26.2
GTEX-13FHP-2426-SM-5KLZ5 25.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

59.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 59.4
FF:10014-101C5 62,83,84 years, mixed 59.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.